2014

Endo TR, Kubaláková M, Vrána J, Doležel J (2014) Hyperexpansion of wheat chromosomes sorted by flow cytometry. Genes Genet. Syst. 89, 181-185; DOI: 10.1266/ggs.89.181

Lucas SJ, Akpınar BA, Šimková H, Kubaláková M, Doležel J, Budak H (2014) Next generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications. BMC Genomics 15, 1080; DOI: 10.1186/1471-2164-15-1080

Mago R, Tabe L, Vautrin S, Šimková H, Kubaláková M, Upadhyaya N, Berges H, Kong X, Breen J, Doležel J, Appels R, Ellis JG, Spielmeyer W (2014) Major haplotype divergence including multiple germin-like protein genes, at the wheat Sr2 adult plant stem rust resistance locus. BMC Plant Biol. 14, 379; DOI: 10.1186/s12870-014-0379-z

Cápal P, Ondřej V (2014) Expression and epigenetic profile of protoplast cultures (Cucumis sativus L.). In Vitro Cell. Dev. Biol.-Plant 50, 789-794; DOI: 10.1007/s11627-014-9638-9

Michalcová V, Dušinský R, Sabo M, Al Beyroutiová M, Hauptvogel P, Ivaničová Z, Švec M (2014) Taxonomical classification and origin of Kamut^® wheat. Plant Syst. Evol. 300, 1749-1757; DOI: 10.1007/s00606-014-1001-4

Ouyang S, Zhang D, Han J, Zhao X, Cui Y, Song W, Huo N, Liang Y, Xie J, Wang Z, Wu Q., Chen Y-X, Lu P, Zhang D-Y, Wang L, Sun H, Yang T, Keeble-Gagnere G, Appels R, Doležel J, Ling H-Q, Luo M, Gu Y, Sun Q, Liu Z (2014) Fine physical and genetic mapping of powdery mildew resistance gene MlIW172 originating from wild emmer (Triticum dicoccoides). PLoS ONE 9, e100160; DOI: 10.1371/journal.pone.0100160

Pfeifer M, Kugler KG, Sandve SR, Zhan B, Rudi H, Hvidsten TR, Rogers J, Doležel J, Pozniak C, Eversole K, Feuillet C, Gill B, Friebe B, Lukaszewski AJ, Sourdille P, Endo TR, Kubaláková M, Číhalíková J, Dubská Z, Vrána J, Šperková R, Šimková H, Febrer M, Clissold L, McLay K, Singh K, Chhuneja P, Singh NK, Khurana J, Akhunov E, Choulet F, Alberti A, Barbe V, Wincker P, Kanamori H, Kobayashi F, Itoh T, Matsumoto T, Sakai H, Tanaka T, Wu J, Ogihara Y, Handa H, Maclachlan PR, Sharpe A, Klassen D, Edwards D, Batley J, Olsen OA, Sandve SR, Lien S, Steuernagel B, Wulff B, Caccamo M, Ayling S, Ramirez-Gonzalez RH, Clavijo BJ, Wright J, Pfeifer M, Spannagl M, Martis MM, Mascher M, Chapman J, Poland JA, Scholz U, Barry K, Waugh R, Rokhsar DS, Muehlbauer GJ, Stein N, Gundlach H, Zytnicki M, Jamilloux V, Quesneville H, Wicker T, Faccioli P., Colaiacovo M, Stanca AM, Budak H, Cattivelli L, Glover N, Pingault L, Paux E, Sharma S, Appels R, Bellgard M, Chapman B, Nussbaumer T, Bader KC, Rimbert H, Wang S, Knox R, Kilian A, Alaux M, Alfam F, Couderc L, Guilhot N, Viseux C, Loaec, M, Keller B, Praud S, Mayer KF (2014) Genome interplay in the grain transcriptome of hexaploid bread wheat. Science 345: 1250091; DOI: 10.1126/science.1250091

Marcussen T, Sandve SR, Heier L, Spannagl M, Pfeifer M, Rogers J, Doležel J, Pozniak C, Eversole K, Feuillet C, Gill B, Friebe B, Lukaszewski AJ, Sourdille P, Endo TR, Kubaláková M, Číhalíková J, Dubská Z, Vrána J, Šperková R, Šimková H, Febrer M, Clissold L, McLay K, Singh K, Chhuneja P, Singh NK, Khurana J, Akhunov E, Choulet F, Alberti A, Barbe V, Wincker P, Kanamori H, Kobayashi F, Itoh T, Matsumoto T, Sakai H, Tanaka T, Wu J, Ogihara Y, Handa H, Maclachlan PR, Sharpe A, Klassen D, Edwards D, Batley J, Olsen OA, Sandve SR, Lien S, Steuernagel B, Wulff B, Caccamo M, Ayling S, Ramirez-Gonzalez RH, Clavijo BJ, Wright J, Pfeifer M, Spannagl M, Martis MM, Mascher M, Chapman J, Poland JA, Scholz U, Barry K, Waugh R, Rokhsar DS, Muehlbauer GJ, Stein N, Gundlach H, Zytnicki M, Jamilloux V, Quesneville H, Wicker T, Faccioli P, Colaiacovo M, Stanca AM, Budak H, Cattivelli L, Glover N, Pingault L, Paux E, Sharma S, Appels R, Bellgard M, Chapman B, Nussbaumer T, Bader KC, Rimbert H, Wang S, Knox R, Kilian A, Alaux M, Alfam F, Couderc L, Guilhot N, Viseux C, Loaec M, Keller B, Praud S, Jakobsen KS, Wulff BB, Steuernagel B, Mayer KF (2014) Ancient hybridizations among the ancestral genomes of bread wheat. Science 345: 1250092; DOI: 10.1126/science.1250092

Ćavar S, Šolić M E, Maksimović M (2014) Chemical Composition and Antioxidant Activity of Two Satureja Species from Mt. Biokovo. Botanica Serbica 38, 159-165; ISSN: 1821-2158

Hatipi M, Papajani V, Ćavar S, Koliqi R (2014) Analysis of Volatile Compounds of Origanum vulgare L. Growing Wild in Kosovo. J. Essent. Oil Bear. Pl. 17, 148-157;
DOI: 10.1080/0972060X.2014.884772

Toska Papajani V, Hatipi M, Ćavar S, Haloci E (2014) GC/MS Analysis of the Essential Oil of Thymus tosevii Vel. from Kosovo. International Journal of Pharmacognosy and Phytochemistry 29, 1276-1282; ISSN: 2051-7858

Doležalová I, Koprna R, Petrželová I, Duchoslav M (2014) Možné způsoby chemické ochrany rokety seté – předběžná studie. Úroda 62, 517-520

Kopecký P, Hron, K, Hrůzová K, Hýbl M, Dušek K (2014) Studium rezistence vybraných genotypů čínského zelí a růžičkové kapusty vůči nádorovitosti brukvovitých. Úroda 62, 207-210.

Petrželová I, Doležalová I (2014) Problematika zdravotního stavu genetických zdrojů vybraných druhů zelenin při jejich regeneraci v podmínkách technické izolace. Úroda 62, 49-56.

Chamrád I, Simerský R, Bérešová L, Strnad M, Šebela M, Lenobel R (2014) Proteomic identification of a candidate sequence of wheat cytokinin-binding protein 1. J.Plant Growth Regul. 33, 896-902; DOI: 10.1007/s00344-014-9417-z

Kašperová A, Cáhliková R, Kunert J, Šebela M, Raška M (2014) Exposition of dermatophyte Trichophyton mentagrophytes to L-cystine induces expression and activation of cysteine dioxygenase. Mycoses 57, 672–678; DOI: 10.1111/myc.12220

Doležalová I (2014) Genetic Resources of Leafy Vegetables with Respect to the Genus Lactuca L. In: Petrželová I, Doležalová I, Sapáková E, Horák M (eds.) Genetic Resources of Vegetable and Special Crops, Folia Univ. Agric. et Silvic. Mendel. Brun. Volume VII, 32-45; ISBN 978-80-7509-147-5

Dušková E, Dušek K (2014) Collection of Genetic Resources of Medicinal, Aromatic and Culinary Plants (MAPs). In: Petrželová I, Doležalová I, Sapáková E, Horák M (eds.) Genetic Resources of Vegetable and Special Crops, Folia Univ. Agric. et Silvic. Mendel. Brun. Volume VII, 55-71. ISBN 978-80-7509-147-5

Hýbl M (2014) Collection of Genetic Resources of Garden Legumes. In: Petrželová I, Doležalová I, Sapáková E, Horák M (eds.) Genetic Resources of Vegetable and Special Crops, Folia Univ. Agric. et Silvic. Mendel. Brun. Volume VII, 46-54. ISBN 978-80-7509-147-5

Kopecký P (2014) Collection of Genetic Resources of the Cruciferous Vegetables. In: Petrželová I, Doležalová I, Sapáková E, Horák M (eds.) Genetic Resources of Vegetable and Special Crops, Folia Univ. Agric. et Silvic. Mendel. Brun. Volume VII, 18-24. ISBN 978-80-7509-147-5. ISSN 1803-2109

Petrželová I (2014) Diseases and Pests of the Most Important Medicinal, Aromatic and Culinary Plants (MAPs). In: Petrželová I, Doležalová I, Sapáková E, Horák M (eds.) Genetic Resources of Vegetable and Special Crops, Folia Univ. Agric. et Silvic. Mendel. Brun. Volume VII, 72-89. ISBN 978-80-7509-147-5

Stavělíková H (2014) Genetic Resources of Bulb Vegetables with Respect to Garlic (Allium sativum L.). In: Petrželová I, Doležalová I, Sapáková E, Horák M (eds.) Genetic Resources of Vegetable and Special Crops, Folia Univ. Agric. et Silvic. Mendel. Brun. Volume VII, 25-31, Brno: Folia Universitas ISBN 978-80-7509-147-5

Petrželová I, Doležalová I, Sapáková E, Horák M. (eds.) (2014) Genetic Resources of Vegetable and Special Crops, Folia Univ. Agric. et Silvic. Mendel. Brun. Volume VII, , ISBN 978-80-7509-147-5

Singh AP, Fridman Y, Friedlander-Shani L, Tarkowská D, Strnad M, Savaldi-Goldstein S (2014) Activity of the Brassinosteroid Transcription Factors BRASSINAZOLE RESISTANT1 and BRASSINOSTEROID INSENSITIVE1-ETHYL METHANESULFONATE-SUPPRESSOR1/BRASSINAZOLE RESISTANT2 Blocks Developmental Reprogramming in Response to Low Phosphate Availability. Plant Physiol. 166, 678-688; DOI:10.1104/pp.114.245019

Poursarebani N, Nussbaumer T, Šimková H, Šafář J, Witsenboer H, Oeveren J, Doležel J, Mayer KFX, Stein N, Schnurbusch T (2014) Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A. Plant J. 79, 334-347; DOI: 10.1111/tpj.12550

Öz MT, Turan Ö, Kayihan C, Eyidogan F, Ekmekci Y, Yücel M, Öktem HA (2014) Evaluation of photosynthetic performance of wheat cultivars exposed to boron toxicity by the JIP fluorescence test. Photosynthetica 52, 555-563; DOI:10.1007/s11099-014-0065-2

Nevrtalová E, Baloun J, Hudzieczek V, Cegan R, Vyskot B, Doležel J, Šafář J, Milde D, Hobza R (2014) Expression response of duplicated metallothionein 3 gene to copper stress in Silene vulgaris ecotypes. Protoplasma 251, 1427-1439; DOI:10.1007/s00709-014-0644-x

Mojzych M, V. Šubertová, A. Bielawska, K. Bielawski, V. Bazgier, K. Berka, T. Gucký, E. Fornal, V. Kryštof (2014) Synthesis and kinase inhibitory activity of new sulfonamide derivatives of pyrazolo[4,3-e][1,2,4]triazines. Eur. J. Med. Chem. 78, 217-224; DOI: 10.1016/j.ejmech.2014.03.054

Mazaheri M, Kianian PMA, Mergoum M, Valentini GL, Seetan R, Pirseyedi SM, Kumar A, Gu YQ, Stein N, Kubaláková M, Doležel J, Denton AM, Kianian SF (2014) Transposable Element Junctions in Marker Development and Genomic Characterization of Barley. Plant Genome 7, 1-8; DOI:10.3835/plantgenome2013.10.0036

Malik S, Bíba O, Grúz J, Arroo RRJ, Strnad M (2014) Biotechnological approaches for producing aryltetralin lignans from Linum species. Phytochem. Rev. 13, 893-913; DOI:10.1007/s11101-014-9345-5

Ma J, Stiller J, Wei Y, Zheng YL, Devos KM, Doležel J, Jiu C (2014) Extensive Pericentric Rearrangements in the Bread Wheat (Triticum aestivum L.) Genotype “Chinese Spring” Revealed from Chromosome Shotgun Sequence Data. Genome Biol. Evol. 6, 3039-3048; DOI:10.1093/gbe/evu237

Li R, Li J, Li S, Qin G, Novák O, Pěnčík A et al. (2014) ADP1 Affects Plant Architecture by Regulating Local Auxin Biosynthesis. PLoS Genet. 10, e1003954; DOI:10.1371/journal.pgen.1003954

Dockter C, Gruszka D, Braumann I, Druka A, Druka I, Franckowiak J, Gough S, Janeczko A, Kurowska M, Lundqvist J, Lundqvist U, Marzec M, Matyszczak I, Müller AH, Oklestkova J, Schulz B, Zakhrabekova S, Hansson M (2014) Induced Variations in Brassinosteroid Genes Define Barley Height and Sturdiness, and Expand the Green Revolution Genetic Toolkit. Plant Physiol. 166, 1912-1927; DOI: 10.1104/pp.114.250738

Ibrahimi MH, Papajani V, Cavar Zeljkovic S, Matevski V (2014) Essential Oil Analysis of Two Thymus spp. Growing Wild in Kosovo. J. Essent. Oil Bear. Plants 17, 832-837; DOI:10.1080/0972060X.2014.884773

Čermák V, Vieira P, Čudejková M, Gaar V, Tománková K, Mikušková K, Eisenback JD, Mota M (2014) Bursaphelenchus hofmanni Braasch, 1998 associated with peat growth substrate in hops nurseries in the Czech Republic. Nematology 16, 739-742; DOI:10.1163/15685411-00002801

Aremu AO, Moyo M, Amoo OS, Grúz J, Šubrtová M, Plíhalová L, Doležal K, Van Staden J (2014) Effect of a novel aromatic cytokinin derivative on phytochemical levels and antioxidant potential in greenhouse grown Merwilla plumbea. Plant Cell Tissue Organ Cult. 119, 501-509; DOI:10.1007/s11240-014-0550-0

Danihlík J, Šebela M, Petřivalský M, Lenobel R (2014) A sensitive quantification of the peptide apidaecin 1 isoforms in single bee tissue using a weak cation exchange pre-separation and nanocapillary liquid chromatography coupled with mass spectrometry. J. Chromatogr. A, 134–144; DOI: 10.1016/j.chroma.2014.11.041

Yadav DK, Prasad A, Kruk J, Pospíšil P (2014) Evidence for the involvement of loosely bound plastosemiquinones in superoxide anion radical production in photosystem II. PLoS ONE 9, e115466; DOI: 10.1371/journal.pone.0115466

Saichana N, Matsushita K, Adachi O, Frébort I, Frébortová J (2014) Acetic acid bacteria: A group of bacteria with versatile biotechnological applications. Biotechnol. Adv., in press, DOI: 10.1016/j.biotechadv.2014.12.001

Takáč T, Šamajová O, Vadovič P, Pechan T, Košútová P, Ovečka M, Husičková A, Komis G, Šamaj J (2014) Proteomic and Biochemical Analyses Show Functional Network of Proteins Involved in Antioxidant Defense of Arabidopsis anp2anp3 Double Mutant. J. Proteome Res. 13, 5347–5361; DOI: 10.1021/pr500588c

Rohozková J, Šebela M, Navrátil M (2014) P1 peptidase of pea seed-borne mosaic virus contains non-canonical C2H2 zinc finger and may act in a truncated form. J. Plant Sci. Mol. Breed.3:1.; DOI: 10.7243/2050-2389-3-1

Pospíšil P, Prasad A (2014) Formation of singlet oxygen and protection against its oxidative damage in Photosystem II under abiotic stress. J. Photochem. Photobiol. B-Biol. 137, 39 – 48; DOI: 10.1016/j.jphotobiol.2014.04.025

Pospíšil P (2014) The role of Metals in Production and Scavenging of Reactive Oxygen Species in Photosystem II. Plant Cell Physiol. 55, 1224-1232; DOI: 10.1093/pcp/pcu053

Kubala M, Geletičová J, Huličiak M, Zatloukalová M, Vacek J, Šebela M (2014) Na+/K+-ATPase inhibition by cisplatin and consequences for cisplatin nephrotoxicity. Biomed. Pap-Olomouc 158, 194-200; DOI: 10.5507/bp.2014.018

Pospíšil P, Prasad A, Rác M (2014) Role of reactive oxygen species in ultra-weak photon emission in biological systems. J. Photochem. Photobiol. B-Biol. 139, 11-23; DOI: 10.1016/j.jphotobiol.2014.02.008

Prasad A, Rossi C, Lamponi S, Pospíšil P, Foletti A (2014) New perspective in cell communication: Potential role of ultra-weak photon emission. J. Photochem. Photobiol. B-Biol.139, 47-53; DOI: 10.1016/j.jphotobiol.2014.03.004

Cifra M, Pospíšil P (2014) Ultra-weak photon emission from biological samples: Definition, mechanisms, properties, detection and applications. J. Photochem. Photobiol. B-Biol. 139, 2-10; DOI: 10.1016/j.jphotobiol.2014.02.009

Huličiak M, Reinhard L, Laursen M, Fedosova N, Nissen P, Kubala M (2014) Crystals of Na+/K+-ATPase with bound cisplatin. Biochem. Pharmacol. 92, 494–498; DOI: 10.1016/j.bcp.2014.08.029

Jorda R, Navratilová J, Husková Z, Schütznerová E, Cankař P, Strnad M, Kryštof V (2014) Arylazopyrazole AAP1742 inhibits CDKs and induces apoptosis in multiple myeloma cells via Mcl-1 downregulation. Chem. Biol. Drug Des. 84, 402-408; DOI: 10.1111/cbdd.12330

Aremu AO, Masondo NA, Sunmonu TO, Kulkarni MG, Zatloukal M, Spíchal L, Doležal K, Van Staden J (2014) A novel inhibitor of cytokinin degradation (INCYDE) influences the biochemical parameters and photosynthetic apparatus in NaCl-stressed tomato plants. Planta 240, 877–889; DOI: 10.1007/s00425-014-2126-y

Aremu AO, Plačková L, Bairu MW, Novák O, Plíhalová L, Doležal K, Finnie JF, Van Staden J (2014) How does exogenously applied cytokinintype affect growth and endogenous cytokinins in micropropagated Merwilla plumbea? Plant Cell Tissue Organ Cult. 118, 245–256; DOI:10.1007/s11240-014-0477-5

Moyo M, Amoo SO, Aremu AO, Grúz J, Šubrtová M, Doležal K, Van Staden J (2014) Plant regeneration and biochemical accumulation of hydroxybenzoic and hydroxycinnamic acid derivatives in Hypoxis hemerocallideaorgan and callus cultures. Plant Sci. 227, 157 – 164; DOI: 10.1016/j.plantsci.2014.08.003

Pazosa G, Rivadullaa ML, Pérez-Garcíaa X, Gándaraa Z, Pérez M (2014) Gemini Analogs of Vitamin D. Curr. Top. Med. Chem. 14, 2388 – 2397; DOI: 10.2174/1568026615666141208100411

Saiz-Fernández I, De Diego N, Sampedro MC, Mena-Petited A, Ortiz-Barredoe A, Lacuestaa M (2014) High nitrate supply reduces growth in maize, from cell to whole plant. J. Plant Physiol., 120 – 129; DOI:10.1016/j.jplph.2014.06.018

Rengasamy KRR, Amoo SO, Aremu AO, Stirk WA, Gruz J, Šubrtová M, Doležal K, Van Staden J (2014) Phenolic profiles, antioxidant capacity, and acetylcholinesterase inhibitory activity of eight South African seaweeds. J. Appl. Phycol.; DOI: 10.1007/s10811-014-0438-8

Tarkowská D, Novák O, Floková K, Tarkowski P, Turečková V, Grúz J, Rolčík J, Strnad M (2014) Quo vadis plant hormone analysis? Planta 240, 55–76; DOI: 10.1007/s00425-014-2063-9

Graeber K, Linkies A, Steinbrecher T, Mummenhoff K, Tarkowská D, Turečková V, Ignatz M, Sperber K, Voegele A, de Jong H, Urbanová T, Strnad M, Leubner-Metzger G (2014) Delay of germination 1 mediates a conserved coat-dormancy mechanism for the temperature- and gibberellin-dependent control of seed germination. Proc. Natl. Acad. Sci. U S A 111, E3571-80; DOI: 10.1073/pnas.1403851111

De Rybel B, Adibi M, Breda AS, Wendrich JR, Smit ME, Novák O, Yamaguchi N, Yoshida S, Van Isterdael G, Palovaara J, Nijsse B, Boekschoten MV, Hooiveld G, Beeckman T, Wagner D, Ljung K, Fleck C, Weijers D (2014) Plant development. Integration of growth and patterning during vascular tissue formation in Arabidopsis. Science 345, 1255215; DOI: 10.1126/science.1255215

Floková K, Tarkowská D, Miersch O, Strnad M, Wasternack C, Novák O (2014) UHPLC-MS/MS based target profiling of stress-induced phytohormones. Phytochemistry 105, 147–157; DOI: 10.1016/j.phytochem.2014.05.015

Islam MA, Tarkowská D, Clarke JL, Blystad DR, Gislerod HR, Torre S, Olsen JE (2014) Impact of end-of-day red and far-red light on plant morphology and hormone physiology of poinsettia. Sci Hortic-Amsterdam 174, 77–86; DOI: 10.1016/j.scienta.2014.05.013

Jedinák L, Kryštof V, Trávníček Z, Cankař P (2014) Multicomponent and Regioselective Synthesis of Dihydropyrazolo[1,5-a]pyrimidines from Aromatic Aldehydes, Meldrum’s Acid, and Aminopyrazole CAN508. Heterocycles 89, 1892–1904; DOI: 10.3987/COM-14-13026

Korovetska H, Novák O, Jůza O, Gloser V (2014) Signalling mechanisms involved in the response of two varieties of Humulus lupulus L. to soil drying: I. changes in xylem sap pH and the concentrations of abscisic acid and anions. Plant Soil Environ. 380, 375–387. DOI: 10.1007/s11104-014-2101-1

Lindner AC, Lang D, Seifert M, Podlešáková K, Novák O, Strnad M, Reski R., von Schwartzenberg K. (2014) Isopentenyltransferase-1 (IPT1) knockout in Physcomitrella together with phylogenetic analyses of IPTs provide insights into evolution of plant cytokinin biosynthesis. J. Exp. Bot. 65, 2533-43; DOI: 10.1093/jxb/eru142

Staehr P, Löttgert T, Christmann A, Krueger S, Rosar C, Rolčík J, Novák O, Strnad M, Bell K, Weber APM, Flügge UI, Häusler RE (2014) Reticulate leaves and stunted roots are independent phenotypes pointing at opposite roles of the phosphoenolpyruvate/phosphate translocator defective in cue1 in the plastids of both organs. Front. Plant Sci. 5, 126; DOI: 10.3389/fpls.2014.00126

Stirk WA, Bálint P, Tarkowská D, Novák O, Maróti G, Ljung K, Turečková V, Strnad M, Ördög V, van Staden J (2014) Effect of light on growth and endogenous hormones in Chlorella minutissima (Trebouxiophyceae). Plant Physiol. Bioch. 79, 66-76; DOI: 10.1016/j.plaphy.2014.03.005

Stirk WA, Tarkowská D, Turečková V, Strnad M, van Staden J (2014) Abscisic acid, gibberellins and brassinosteroids in Kelpak (R), a commercial seaweed extract made from Ecklonia maxima. J. Appl. Phycol. 26(1), 561–567; DOI: 10.1007/s10811-013-0062-z

Tian H, Wabnik K, Niu T, Li H, Yu Q, Pollmann S, Vanneste S, Govaerts W, Rolčík J, Geisler M, Friml J, Ding Z (2014) WOX5-IAA17 feedback circuit-mediated cellular auxin response is crucial for the patterning of root stem cell niches in Arabidopsis. Mol. Plant. 7; 277-89. DOI: 10.1093/mp/sst118

Jiskrová E, Kubalová I, Ikeda Y (2014) What turns on and off the cytokinin metabolisms and beyond. In: Applied Plant Genomics and Biotechnology. (Poltronieri, ed.), Elsevier 20-36.

Petrovská B, Jeřábková H, Chamrád I, Vrána J, Lenobel R, Uřinovská J, Šebela M, Doležel J (2014) Proteomic analysis of barley cell nuclei purified by flow sorting. Cytogenet. Genome Res. 143, 78-86; DOI: 10.1159/000365311

Sergeeva EM, Afonnikov DA, Koltunova MK, Gusev VD, Miroshnichenko LA, Vrána J, Kubaláková M, Poncet C, Sourdille P, Feuillet C, Doležel J, Salina EA (2014) Common wheat chromosome 5B composition analysis using low-coverage 454 sequencing. Plant Genome 7, 1-16; DOI:10.3835/plantgenome2013.10.0031

Luštinec J, Cvrčková F, Čížková J, Doležel J, Kamínek M, Žárský V (2014) Multiple, concentration-dependent effects of sucrose, auxins and cytokinins in explant cultures of kale and tobacco. Acta Physiol. Plant. 36, 1981-1991; DOI: 10.1007/s11738-014-1573-1

Kubát Z, Žluvová J, Vogel I, Kováčová V, Čermák T, Cegan R, Hobza R, Vyskot B, Kejnovský E (2014) Possible mechanisms responsible for absence of a retrotransposon family on a plant Y chromosome. New Phytol. 202, 662-678; DOI: 10.1111/nph.12669

Baloun J, Nevrtalová E, Kováčová V, Hudzieczek V, Cegan R, Vyskot B, Hobza R (2014) Characterization of the HMA7 gene and transcriptomic analysis of candidate genes for copper tolerance in two Silene vulgaris ecotypes. J. Plant Physiol. 171, 1188-1196; DOI: 10.1016/j.jplph.2014.04.014

Soukupová M, Nevrtalová E, Čížková J, Vogel I, Cegan R, Hobza R, Vyskot B (2014) The X chromosome is necessary for somatic development in the dioecious Silene latifolia: Cytogenetic and molecular evidence and sequencing of a haploid genome. Cytogenet. Genome Res. 143, 96-103; DOI: 10.1159/000363431

Králová T, Cegan R, Kubát Z, Vrána J, Vyskot B, Vogel I, Kejnovský E, Hobza R (2014) Identification of a novel retrotransposon with sex chromosome-specific distribution in Silene latifolia. Cytogenet. Genome Res. 143, 87-95; DOI: 10.1159/000362142

Ruperao P, Chan CK, Azam S, Karafiátová M, Hayashi S, Čížková J, Saxena RK, Šimková H, Song C, Vrána J, Chitikineni A, Visendi P, Gaur PM, Millán T, Singh KB, Taran B, Wang J, Batley J, Doležel J, Varshney RK, Edwards D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnol. J. 12, 778-786; DOI: 10.1111/pbi.12182

Berson T, Wangenheim D, Takáč T, Šamajová O, Rosero A, Ovečka M, Komis G, Stelzer E H, Šamaj J (2014) Trans-Golgi network localized small GTPase RabA1d is involved in cell plate formation and oscillatory root hair growth. BMC Plant Biol. 14, 252; DOI: 10.1186/s12870-014-0252-0

Kašpárková J, Thibault T, Kostrhunová H, Štěpánková J, Vojtíšková M, Muchová T, Midoux P, Malinge JM, Brabec V (2014) Different affinity of nuclear factor-kappa B proteins to DNA modified by antitumor cisplatin and its clinically ineffective trans isomer. Febs Journal 281, 1393 – 1408; DOI: 10.1111/febs.12711

Takáč T, Pechan T, Šamajová O, Šamaj J (2014) Integrative chemical proteomics and cell biology methods to study endocytosis and vesicular trafficking in Arabidopsis. Methods in Molecular Biology 1209, 265-283; DOI: 10.1007/978-1-4939-1420-3_20

Ovečka M , Lichtscheidl I, Šamaj J (2014) Live microscopy analysis of endosomes and vesicles in tip-growing root hairs. Methods in Molecular Biology 1209, 31-44; DOI: 10.1007/978-1-4939-1420-3_3

Libiaková M, Floková K, Novák O, Slováková L, Pavlovič A (2014) Abundance of Cysteine Endopeptidase Dionain in Digestive Fluid of Venus Flytrap (Dionaea muscipula Ellis) Is Regulated by Different Stimuli from Prey through Jasmonates. PLoS ONE 9: e104424; DOI: 10.1371/journal.pone.0104424

Choulet F, Alberti A, Theil S, Glover N, Barbe V, Daron J, Pingault L, Sourdille P, Couloux A, Paux E, Leroy P, Mangenot S, Guilhot N, Le Gouis, Balfourier F, Alaux M, Jamilloux V, Poulain J, DUrand C, Bellec A, Gaspin C, Šafář J, Doležel J, Rogers J, Vandepoele K, Aury JM, Mayer K, Berges H, Quesneville H, Wincker P, Feuillet C (2014) Structural and functional partitioning of bread wheat chromosome 3B. Science 345: 1249721; DOI: 10.1126/science.1249721

The International Wheat Genome Sequencing Consortium (IWGSC) (2014) A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science 345: 1251788; DOI: 10.1126/science.1251788

Novák P, Hřibová E, Neumann O, Koblížková A, Doležel J, Macas J (2014) Genome-wide analysis of repeat diversity across the family Musaceae. PLos ONE 9: e98918; DOI: 10.1371/journal.pone.0098918

Molnár I, Kubaláková M, Šimková H, Farkas A, Cseh A, Megyeri M, Vrána J, Molnár-Láng M, Doležel J (2014) Flow cytometric chromosome sorting from diploid progenitors of bread wheat, T. urartu, Ae. speltoides and Ae. tauschii. Theor. Appl. Genet. 127, 1091-1104; DOI: 10.1007/s00122-014-2282-2

Tanaka T, Koayashi F, Joshi GP, Omuki R, Sakai H, Kanamori H, Wu J, Šimková H, Nasuda S, Endo TR, Hayakawa K, Doležel J, Ogihara Y, Itoh T, Matsumoto T, Handa H (2014) Next-generation survey sequencing and the molecular organization of wheat chromoseome 6B. DNA Res.21, 103 – 114; DOI: 10.1093/dnares/dst041

Tiwari VK, Wang S, Sehgal S, Vrána J, Friebe B, Kubaláková M, Chhuneja P, Doležel J, Akhunov E, Kalia B, Sabir J, Gill BS (2014) SNP discovery for mapping alien introgressions in wheat. BMC Genomics 15, 273; DOI: 10.1186/1471-2164-15-273

Deng P, Nie X, Wang L, Cui L, Liu P, Tong W, Biradar SS, Edwards D, Berkman P, Šimková H, Doležel J, Luo M, You F, Batley J, Fleury D, Appels R, Weining S (2014) Computational identification and comparative analysis of miRNAs in wheat group 7 chromosomes. Plant Mol. Biol. Rep. 32, 487 – 500; DOI: 10.1007/s11105-013-0669-x

Šteflová P, Hobza R, Vyskot B, Kejnovský E (2014) Strong accumulation of chloroplast DNA in the Y chromosomes of Rumex acetosa and Silene latifolia. Cytogenet. Genome Res. 14, 59 – 65; DOI: 10.1159/000355212

Choulet F, Caccamo M, Wright J, Alaux M, Šimková H, Šafář J, Leroy P, Doležel J, Rogers J, Eversole K, Feuillet C (2014) The wheat black jack: Advances towards sequencing the 21 chromosomes of bread wheat. In: Tuberosa R, Graner A, Frison E (eds.) Genomics of plant genetic resources, Springer, 405 – 438; DOI: 10.1007/978-94-007-7572-5_17

Podwyszyńska M, Novák O, Doležal K, Strnad M (2014) Endogenous cytokinin dynamics in micropropagated tulips during bulb formation process influenced by TDZ and iP pretreatment. Plant Cell Tiss Organ Cult., 331 – 346; DOI: 10.1007/s11240-014-0537-x

Smékalová V, Luptovčiak I, Komis G, Šamajová O, Ovečka M, Doskočilová A, Takáč T, Vadovič P, Novák O, Pechan T, Ziemann A, Košútová P, Šamaj J (2014) Involvement of YODA and mitogen activated protein kinase 6 in Arabidopsis post-embryogenic root development through auxin up-regulation and cell division plane orientation. New Phytol., 1175 – 1193; DOI: 10.1111/nph.12880

Komis G, Šamaj J (eds.) (2014) Plant MAP Kinases. Methods and Protocols, p. 266; Springer, ISBN 978-1-4939-0921-6

Komis G, Takáč T, Bekešová S, Vadovič P, Šamaj J (2014) Affinity-Based SDS PAGE Identification of Phosphorylated Arabidopsis MAPKs and Substrates by Acrylamide Pendant Phos-Tag™. Methods in Molecular Biology 1171, 47-63; DOI: 10.1007/978-1-4939-0922-3_5

Šamajová O, Komis G, Šamaj J (2014) Immunofluorescent Localization of MAPKs and Colocalization with Microtubules in Arabidopsis Seedling Whole-Mount Probes. Methods in Molecular Biology 1171, 107-115; DOI: 10.1007/978-1-4939-0922-3_9

Ovečka M, Šamajová O, Baluška F, Šamaj J (2014) Immunofluorescent Localization of MAPKs in Steedman’s Wax Sections. Methods in Molecular Biology 1171, 117-130; DOI: 10.1007/978-1-4939-0922-3_10

Doskočilová A, Luptovčiak I, Smékalová V, Šamaj J (2014) Fluorescent Protein Tagging of Arabidopsis MAPKs for In Vivo Localization Studies. Methods in Molecular Biology 1171, 131-145; DOI: 10.1007/978-1-4939-0922-3_11

Křenek P, Smékalová V (2014) Quantification of stress-induced mitogen-activated protein kinase expressional dynamic using reverse transcription quantitative real-time PCR. Methods in Molecular Biology 1171, 13-25; DOI: 10.1007/978-1-4939-0922-3_2

Cmoch P, Korda A, Rárová L, Oklešťková J, Strnad M, Gwardiak K, Karczewski R, Pakulski Z (2014) Synthesis of lupane-type saponins containing unusual α-D-idopyranoside fragment as potent cytotoxic agents. Eur. J. Org. Chem., 2717 – 2730; DOI: 10.1002/ejoc.201402187

Kvasnica M, Oklešťková J, Bazgier V, Rárová L, Berka K, Strnad M (2014) Biological activities of new monohydroxylated brassinosteroid analogues with a carboxylic group in the side chain. Steroids 85, 58 – 64; DOI: 10.1016/j.steroids.2014.04.007

Nair JJ, Rárová L, Strnad M, Bastidad J, Cheesman L, van Staden J (2014) Crinane Alkaloids of the Amaryllidaceae with Cytotoxic Effects in Human Cervical Adenocarcinoma (HeLa) Cells. Nat. Prod. Commun. 9, 461 – 466; DOI: will be provided later

Ovečka M, Takáč T, Komis G, Vadovič P, Bekešová S, Doskočilová A, Smékalová V, Luptovčiak I, Šamajová O , Schweighofer A, Meskiene I, Jonak C, Křenek P,Lichtscheidl I, Skultety L, Hirt H, Šamaj J (2014) Salt-induced subcellular kinase relocation and seeding susceptibility caused by overexpression of Medicago SIMKK in Arabidopsis. J. Exp. Bot. 65, 2335 – 2350; DOI: 10.1093/jxb/eru115

Komis G, Mistrík M, Šamajová O, Doskočilová A, Ovečka M, Illés P, Bártek J, Šamaj J (2014) Dynamics and organization of cortical microtubules as revealed by superresolution structured illumination microscopy. Plant Physiology, 129 – 148; DOI: 10.​1104/​pp.​114.​238477

Zalabák D, Galuszka P, Mrízová K, Podlešáková K, Gu R, Frébortová J (2014) Biochemical characterization of the maize cytokinin dehydrogenase family and cytokinin profiling in developing maize plantlets in relation to the expression of cytokinin dehydrogenase genes. Plant Physiol. Biochem. 74, 283-293; DOI:10.1016/j.plaphy.2013.11.020

Pavlovič A, Krausko M, Libiaková M, Adamec L (2014) Feeding on prey increases photosynthetic efficiency in the carnivorous sundew Drosera capensis. Ann. of Bot. 113, 69-78; DOI: 10.1093/aob/mct254

Cmoch P, Korda A, Rárová L, Oklešťková J, Strnad M, Luboradzki R, Paluski Z (2014) Synthesis and structure-reactivity relationship study of cytotoxic lupane-type 3b-O-monodesmosidic saponins with an extended C-28 side chain. Tetrahedron 70, 2717–2730; DOI: 10.1016/j.tet.2014.03.006

Tian F, Greplová M, Frébort I, Dale N, Napier R (2014) A highly selective biosensor with nanomolar sensitivity based on cytokinin dehydrogenase. PLoS ONE 9, e90877; DOI: 10.1371/journal.pone.0090877

Nakai T, Deguchi T, Frébort I, Tanizawa K, Okajima T (2014) Identification of genes essential for the biogenesis of quinohemoprotein amine dehydrogenase. Biochemistry, 53, 895 – 907; DOI: 10.1021/bi401625m

Zhang K, Novák O, Wei Z, Gou M, Zhang X, Yu Z, Yang H, Cai Y, Strnad M, Liu ChJ (2014) Arabidopsis ABCG14 protein controls the acropetal translocation of root-synthesized cytokinins. Nat. Commun. 5, Art.no. 3274; DOI: 10.1038/ncomms4274

Šmehilová M, Spíchal L (2014) The biotechnological potential of cytokinin status manipulation. In: Nick P, Opatrny Z (eds) Applied Plant Cell Biology, Springer, Berlin, Heidelberg, 103-130; DOI: 10.1007/978-3-642-41787-0_4

Vrána J, Cápal P, Bednářová M, Doležel J (2014) Flow cytometry in plant research: A success story. In: Nick P, Opatrný Z (eds.) Applied Plant Cell Biology, Springer, Berlin, Heidelberg, 395-430; DOI: 10.1007/978-3-642-41787-0_13

Kouřil R, Strouhal O, Nosek L, Lenobel R, Chamrád I, Boekema EJ, Šebela M, Ilík P (2014) Structural characterization of a plant photosystem I and NAD (P) H dehydrogenase supercomplex. Plant J. 77, 568 – 576; DOI:10.1111/tpj.12402

Smékalová V, Doskočilová A, Komis G, Šamaj J (2014) Crosstalk between secondary messengers, hormones and MAPK modules during abiotic stress signalling in plants. Biotechnol. Adv. 32, 2-11; DOI: 10.1016/j.biotechadv.2013.07.009

Ovečka M, Takáč T (2014) Managing heavy metal toxicity stress in plants: Biological and biotechnological tools. Biotechnol. Adv. 32, 73-86; DOI: 10.1016/j.biotechadv.2013.11.011

Bahaji A, Li J, Sánchez-López ÁM, Baroja-Fernández E, Muñoz FJ, Ovečka M, Almagro G, Montero M, Ezquer I, Etxeberria E, Pozueta-Romero J (2014) Starch biosynthesis, its regulation and biotechnological approaches to improve crop yields. Biotechnol. Adv. 32, 87-106; DOI: 10.1016/j.biotechadv.2013.06.006

Doležel J, Vrána J, Cápal P, Kubaláková M, Burešová V, Šimková H (2014) Advances in plant chromosome genomics. Biotechnol. Adv. 32, 122-136; DOI: 10.1016/j.biotechadv.2013.12.011

Mrízová K, Holásková E, Öz MT, Jiskrová E, Frébort I, Galuszka P (2014) Transgenic barley: A prospective tool for biotechnology and agriculture. Biotechnol. Adv. 32, 137-157; DOI: 10.1016/j.biotechadv.2013.09.011

Bergougnoux V (2014) The history of tomato: From domestication to biopharming. Biotechnol. Adv. 32, 170-189; DOI:10.1016/j.biotechadv.2013.11.003

Kopecký D, Studer B (2014) Emerging technologies advancing forage and turf grass genomics. Biotechnol. Adv. 32, 190-199; DOI: 10.1016/j.biotechadv.2013.11.010

Milec Z, Valárik M, Bartoš J, Šafář J (2014) Can a late bloomer become an early bird? Tools for flowering time adjustment. Biotechnol. Adv. 32, 200-214; DOI: 10.1016/j.biotechadv.2013.09.008

Tarkowski P, Vereecke D (2014) Threats and opportunities of plant pathogenic bacteria. Biotechnol. Adv. 32, 215-229; DOI: 10.1016/j.biotechadv.2013.11.001

Chalupová J, Raus M, Sedlářová M, Šebela M (2014) Identification of fungal microorganisms by MALDI-TOF mass spectrometry. Biotechnol. Adv., 230 – 241; DOI: 10.1016/j.biotechadv.2013.11.002

Randhawa M, Bansal U, Valárik M, Klocová B, Doležel J, Bariana H (2014) Molecular mapping of stripe rust resistance gene Yr51 in chromosome 4AL of wheat. Theor. Appl. Genet. 127, 317–324; DOI: 10.1007/s00122-013-2220-8

Barnes BD, Kopecký D, Lukaszewski AJ, Baird JH (2014) Evaluation of turf-type interspecific hybrids of meadow fescue with perennial ryegrass for improved stress tolerance. ­Crop Sci. 54, 355–365; DOI: 10.2135/cropsci2013.03.0198

Amoo SO, Aremu AO, Moyo M, Szüčová L, Doležal K, Van Staden J (2014) Physiological effects of a novel aromatic cytokinin analogue in micropropagated Aloe arborescens and Harpagophytum procumbens. Plant Cell Tissue Organ Cult. 116, 17-26; DOI: 10.1007/s11240-013-0377-0

Kopel P, Doležal K, Labger V, Jun D, Adam V, Kuca K, Kizek R (2014) Trithiocyanurate complexes of iron, manganese and nickel and their anticholinesterase activity. Molecules 19, 4338 – 4354; DOI: 10.3390/molecules19044338

Aremu AO, Plačková L, Bairu MW, Novák O, Szüčová L, Doležal K, Finnie JF, Van Staden J (2014) Endogenous cytokinin profiles of tissue-cultured and acclimatized ‚Williams‘ bananas subjected to different aromatic cytokinin treatments. Plant Sci. 214, 88-98; DOI : 10.1016/j.plantsci.2013.09.012

Mortier V, Wasson A, Jaworek P, De Keyser A, Decroos M, Holsters M, Tarkowski P, Mathesius U, Goormachtig S. (2014) Role of LONELY GUY genes in indeterminate nodulation on Medicago truncatula. New Phytol. 20, 582–593; DOI: 10.1111/nph.12681

Rastogi A, Yadav DK, Szymańska R, Kruk J, Sedlářová M, Pospíšil P (2014) Singlet oxygen scavenging activity of tocopherol and plastochromanol in Arabidopsis thaliana: Relevance to photooxidative stress. Plant Cell Environ., 392 – 401; DOI: 10.1111/pce.12161

2013

Černý M, Kuklová A, Hoehenwarter W, Fragner L, Novák O, Rotková G, Jedelský PL, Žáková K, Šmehilová M, Strnad M, Weckwerth W, Brzobohatý B (2013) Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying both dictinct and similar responses to cytokinin down- and up-regulation. J. Exp. Bot. 64, 4193-4206; DOI:10.1093/jxb/ert227

Nair JJ, Rárová L, Strnad M, Bastidad J, van Staden J (2013) Alkaloids from Boophone haemanthoides (Amaryllidaceae). Nat. Prod. Commun. (8), 1705-1710; DOI: will be edited

Pietra S, Gustavsson A, Kiefer C, Kalmbach L, Hörstedt P, Ikeda Y, Stepanova AN, Alonso JM, Grebe M (2013) Arabidopsis SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity. Nat. Commun. 4, Art.no. 2779; DOI: 10.1038/ncomms3779

Wientjes E, Drop B, Kouřil R, Boekema EJ, Croce R (2013) During state 1 to state 2 transition in Arabidopsis thaliana, the photosystem II supercomplex gets phosphorylated but does not disassemble. J. Biol. Chem. 288, 32821 – 32826; DOI: 10.1074/jbc.M113.511691

Karafiátová M, Bartoš J, Kopecký D, Ma L, Sato K, Houben A, Stein N, Doležel J (2013) Mapping nonrecombining regions in barley using multicolor FISH. Chromosome Res. 21: 739-751; DOI: 10.1007/s10577-013-9380-x

Ma J, Stiller J, Berkman PJ, Wei Y, Rogers J, Feuillet C, Doležel J, Mayer KF, Eversole K, Zheng YL, Liu C (2013) Sequence-based analysis of translocations and inversions in bread wheat (Triticum aestivum L.). PLoS ONE 8: e79329; DOI:10.1371/journal.pone.0079329

Breen J, Wicker T, Shatalina M, Frenkel Z, Bertin I, Philippe R, Spielmeyer W, Šimková H, Šafář J, Cattonaro F, Scalabrin S, Magni F, Vautrin S, Berges H, International Wheat Genome Sequencing Consortium, Paux E, Fahima T, Doležel J, Korol A, Feuillet C, Keller B (2013) A physical map of the short arm of wheat chromosome 1A. PLoS ONE 8, e80272; DOI:10.1371/journal.pone.0080272

Martis MM, Zhou R, Haseneyer G, Schmutzer T, Vrána J, Kubaláková M, König S, Kugler KG, Scholz U, Hackauf B, Korzun V, Schön CC, Doležel J, Bauer E, Mayer KFX, Stein N (2013) Reticulate evolution of the rye genome. Plant Cell 25, 3685–3698; DOI: 10.1105/tpc.113.114553

Pont C, Murat F, Guizard S, Flores R, Foucrier S, Bidet Y, Quraishi UM, Alaux M, Doležel J, Fahima T, Budak H, Keller B, Salvi S, Maccaferri M, Steinbach D, Feuillet C, Quesneville H, Salse J (2013) Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. Plant J. 76, 1030–1044; DOI: 10.1111/tpj.12366

Ooi SE, Novak O, Dolezal K, Ishak Z, Ong-Abdullah M (2013) Cytokinin Differences in In Vitro Cultures and Inflorescences from Normal and Mantled Oil Palm (Elaeis guineensis Jacq.). J. Plant Growth Regul. 32, 865-874; DOI: 10.1007/s00344-013-9352-6

Raus M, Šebela M (2013) BIOSPEAN: A freeware tool for processing spectra from MALDI intact cell/spore mass spectrometry. J. Proteomics Bioinform. 6, 282-287; DOI: 10.4172/jpb.1000292

Tiwari A, Rác M, Pospíšil P (2013) Formation of superoxide anion and carbon-centered radicals by photosystem II under high light and heat stress-EPR spin-trapping study. J. Bioenerg. Biomembr. 45, 551-559; DOI: 10.1007/s10863-013-9523-y

Rastogi A, Pospíšil P (2013) Ultra-weak photon emission as a non-invasive tool for the measurement of oxidative stress induced by UVA radiation in Arabidospis thaliana. J. Photochem. Photobiol. B-Biol. 123, 59-64; DOI: 10.1016/j.jphotobiol.2013.03.012

Lebeda A, Mieslerová B, Petřivalský M, Luhová L, Špundová M, Sedlářová M, Nožková-Hlaváčková V, Pink DAC (2013) Resistance mechanisms of wild tomato germplasm to infection of Oidium neolycopersici. Eur. J. Plant Pathol., 1-28; DOI 10.1007/s10658-013-0307-3

Pozharitskaya ON, Shikov AN, Makarova MN, Ivanova SA, Kosman VM, Makarov VG, Bazgier V, Berka K, Otyepka M, Ulrichová J (2013) Antiallergic Effects of Pigments Isolated from Green Sea Urchin (Strongylocentrotus droebachiensis) Shells. Planta Med.; DOI: 10.1055/s-0033-1351098

Petrovská B, Jeřábková H, Kohoutová L, Cenklová V, Pochylová Ž, Gelová Z, Kočárová G, Váchová L, Kurejová M, Tomaštíková E, Binarová P (2013) Overexpressed TPX2 causes ectopic formation of microtubular arrays in the nuclei of acentrosomal plant cells. J. Exp. Bot. 64, 4575-4587; DOI:10.1093/jxb/ert271

Kopecký D, Martis M, Číhalíková J, Hřibová E, Vrána J, Bartoš J, Kopecká J, Cattonaro F, Stočes Š, Novák P, Neumann P, Macas J, Šimková H, Studer B, Asp T, Baird JH, Navrátil P, Karafiátová M, Kubaláková M, Šafář J, Mayer K, Doležel, J (2013) Flow sorting and sequencing meadow fescue chromosome 4F. Plant Physiol. 163, 1323-1337; DOI: 10.1104/pp.113.224105

Mrízová K, Jiskrová E, Vyroubalová Š, Novák O, Ohnoutková L, Pospíšilová H, Frébort I, Harwood WA, Galuszka P (2013) Overexpression of Cytokinin Dehydrogenase Genes in Barley (Hordeum vulgare cv. Golden Promise) Fundamentally Affects Morphology and Fertility. PLoS ONE 8, e79029; DOI: 10.1371/journal.pone.0079029

Hlavinka J, Nauš J, Špundová M (2013) Anthocyanin Contribution to Chlorophyll Meter Readings and its Correction. Photosynth Res 118, 277–295; DOI: 10.1007/s11120-013-9934-y

Haider C, Grubinger M, Řezníčková E, Weiss T, Rotheneder H, Miklos W, Berger W, Jorda R, Zatloukal M, Gucký T, Strnad M, Kryštof V, Mikulits W (2013) Novel Inhibitors of Cyclin-Dependent Kinases Combat Hepatocellular Carcinoma without Inducing Chemoresistance. Mol. Cancer Ther. 12, 1947-1957; DOI: 10.1158/1535-7163

Weitensteiner SB, Liebl J, Kryštof V, Havlíček L, Gucký T, Strnad M, Fürst R, Vollmar AM, Zahler S (2013) Trisubstituted Pyrazolopyrimidines as Novel Angiogenesis Inhibitors. PLoS ONE 8, e54607; DOI: 10.1371/journal.pone.0054607

Zatloukal M, Jorda R, Gucký T et al. (2013) Synthesis and in vitro Biological Evaluation of 2,6,9 – Trisubstituted Purines Targeting Multiple Cycylin-Dependent Kinases. Eur. J. Med. Chem. 61, 61-72; DOI: 10.1016/j.ejmech.2012.06.036

Gucký T, Jorda R, Zatloukal M et al. (2013) A Novel Series of Highly Potent 2,6,9 – Trisubstituted Purine Cyclin-Dependent Kinase Inhibitors. J.Med.Chem. 56, 6234-6247; DOI: 10.1021/jm4006884

Grune T, Šebela M (2013) Special issue on „protein modification“. J. Proteomics 92, 1; DOI: 10.1016/j.jprot.2013.08.014

Kopečná M, Blaschke H, Kopečný D, Vigouroux A, Končitíková R, Novák O, Kotland O, Strnad M, Moréra S, von Schwartzenberg K (2013) Structure and function of nucleoside hydrolases from Physcomitrella and maize catalyzing hydrolysis of purine, pyrimidine and cytokinin ribosides. Plant Physiol., 113.228775, DOI: 10.​1104/​pp.​113.​228775

Bildziukevich U, Rárová L, Saman D, Havlíček L, Drašar P, Wimmer Z (2013) Amides derived from heteroaromatic amines and selected steryl hemiesters. Steroids 78, 1347–1352, DOI: 10.1016/j.steroids.2013.10.003

Magaña-Vergara NE, Rárová L, Soto-Castro D, Farfán N, Strnad M, Santillan R (2013) Synthesis and antiproliferative activity of novel steroidal dendrimer conjugates. Steroids 78, 1254–1262; DOI:10.1016/j.steroids.2013.09.001

Chamrád I, Rix U, Stukalov A, Gridling M, Parapatics K, Müller AC, Altiok S, Colinge J, Superti-Furga G, Haura EB, Bennett KL (2013) A miniturized chemical proteomic approach for target profiling of clinical kinase inhibitors in tumor biopsies. J. Proteome Res. 12, 4005-4017; DOI: 10.1021/pr400309p

Molnár I, Šimková H, Leverington-Waite M, Goram R, Cseh A, Vrána J, Farkas A, Doležel J, Molnár-Láng M, Griffiths S (2013) Syntenic relationships between the U and M genomes of Aegilops, wheat and the model species Brachypodium and rice as revealed by COS markers. PLoS ONE 8, e70844; DOI:10.1371/journal.pone.0070844

Wicker T, Oberhaensli S, Parlange F, Buchmann JP, Shatalina M, Roffler S, Ben-David R, Doležel J, Šimková H, Schulze-Lefert P, Spanu PD, Bruggmann R, Amselem J, Quesneville H, Ver Loren van Themaat E, Paape T, Shimizu KK, Keller B (2013) The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nat. Genet. 45, 1092-1096; DOI:10.1038/ng.2704

Aremu AO, Bairu MW, Szüčová L, Doležal K, Finnie JF, Van Staden J (2013) Genetic fidelity in tissue-cultured ‚Williams‘ bananas – the effect of high concentration of topolins and benzyladenine. Sci. Hortic. 161, 324-327; DOI: 10.1016/j.scienta.2013.07.022

Moyo M, Aremu AO, Šubrtová M, Szüčová L, Doležal K, Van Staden J (2013) Conservation strategy for Pelargonium sidoides DC: Phenolic profile and pharmacological activity of acclimatized plants derived from tissue culture. J. Ethnopharmacol. 149, 557-561; DOI: 10.1016/j.jep.2013.07.021

Aremu AO, Gruz J, Šubrtová M, Szüčová L, Doležal K, Bairu MW, Finnie JF, Van Staden J (2013) Antioxidant and phenolic acid profiles of tissue cultured and acclimatized Merwilla plumbea plantlets in relation to the applied cytokinins. J. Plant Physiol. 170, 1303-1308; DOI:10.1016/j.jplph.2013.04.008

Philippe R, Paux E, Bertin I, Sourdille P, Choulet F, Laugier C, Šimková H, Šafář J, Bellec A, Vautrin S, Frenkel Z, Cattonaro F, Magni F, Scalabrin S, Martis MM, Mayer KFX, Korol A, Bergès H, Doležel J, Feuillet C (2013) A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat. Genome Biol. 14, R64; DOI :10.1186/gb-2013-14-6-r64

Takáč T, Pechan T, Šamajová O, Šamaj J (2013) Vesicular trafficking and stress response coupled to PI3K inhibition by LY294002 as revealed by proteomic and cell biological analysis. J. Proteome Res., 4435–4448; DOI: 10.1021/pr400466x

Farkaš P, Čížová A, Bekešová S, Bystrický S (2013) Comparison of EDC and DMTMM efficiency in glycoconjugate preparation. Int. J. Biol. Macromol. 60, 325–327; DOI: 10.1016/j.ijbiomac.2013.06.014

Lazár D (2013) Simulations show that a small part of variable chlorophyll a fluorescence originates in photosystem I and contributes to overall fluorescence rise. J. Theor. Biol. 335, 249–264; DOI: 10.1016/j.jtbi.2013.06.02

Lazár D, Murch SJ, Beilby MJ, Al Khazaaly S (2013) Exogenous melatonin affects photosynthesis in characeae Chara australis. Plant Signal Behav. 8, e23279; DOI: 10.4161/psb.23279

Stirk WA, Bálint P, Tarkowská D, Novák O, Strnad M, Ördög V, van Staden J (2013) Hormone profiles in microalgae: Gibberellius and brassinosteroids. Plant Physiol. Biochem., 70, 348-353; DOI: 10.1016/j.plaphy.2013.05.037

Franc V, Řehulka P, Raus M, Stulík J, Novák J, Renfrow MB, Šebela M (2013) Elucidating heterogeinity of IgA1 hinge-region O-glycosylation by use of MALDI-TOF/TOF mass spectrometry: Role of cysteine alkylation during sample processing. J.Proteomics, 299–312; DOI: 10.1016/j.jprot.2013.07.013

Novák J, Pavlů J, Novák O, Nožková-Hlaváčková V, Špundová M, Hlavinka J, Koukalová Š, Skalák J, Černý M, Brzobohatý B (2013) High cytokinin levels induce a hypersensitive-like response in tobacco. Ann.Bot. 112, 41-55; DOI:10.1093/aob/mct092

Jersáková J, Trávníček P, Kubátová B, Krejčíková J, Urfus T, Liu ZJ, Lamb A, Ponert J, Schulte K, Čurn V, Vrána J, Leitch I J, Suda J (2013) Genome size variation in Orchidaceae subfamily Apostasioideae: filling the phylogenetic gap. Bot. J. Linn. Soc. 172, 95-105; DOI: 10.1111/boj.12027

Hlavinka J, Nauš J, Fellner M (2013) Spontaneous mutation 7B-1 in tomato impairs blue light-induced stomatal opening. Plant Sci. 209, 75-80; DOI: 10.1016/j.plantsci.2013.04.010

Wang X, Shi L, Lin G, Pan X, Chen H, Wu X, Takáč T, Šamaj J, Xu C (2013) A systematic comparison of embryogenic and non-embryogenic cellsof banana (Musa spp. AAA): Ultrastructural, biochemical and cell wallcomponent analyses. Sci. Hortic. 159, 178–185; DOI: 10.1016/j.scienta.2013.05.008

Khripach VA, Tarkowská D, Zhabinskii VN, Gulyakevich OV, Ermolovich YV, Drašar P, Strnad M (2013) Synthesis and Mass Spectral Fragmentation Patterns of Brassinolide Early Biosynthetic Precursors Labeled at C-26. Nat. Prod. Commun. 8, 771 – 774; DOI: —

Motte H, Galuszka P, Spíchal L, Tarkowski P, Plíhal O, Šmehilová M, Jaworek P, Vereecke D, Werbrouck S, Geelen D (2013) Phenyl-Adenine, Identified in a LIGHT-DEPENDENT SHORT HYPOCOTYLS4-Assisted Chemical Screen, Is a Potent Compound for Shoot Regeneration through the Inhibition of CYTOKININ OXIDASE/DEHYDROGENASE Activity. Plant Physiol. 161, 1229-1241; DOI: 10.​1104/​pp.​ 112.​210716

Plíhal O, Szüčová L, Galuszka P (2013) N9-substituted aromatic cytokinins with negligible side effects on root development are an emerging tool for in vitro culturing. Plant Signal Behav. 8, e24392; DOI: 10.4161/psb.24392

Stirk WA, Ördög V, Novák O, Rolčík J, Strnad M, Bálint P, van Staden J (2013) Auxin and cytokinin relationships in 24 microalgal strain. J. Phycol. 49, 459–467; DOI: 10.1111/jpy.12061

Mrózek L, Coufalová L, Rárová L, Plaček L, Opatřilová R, Dohnal J, Kráľová K, Paleta O, Král V, Drašar P, Jampílek J (2013) New Polyfluorothiopropanoyloxy Derivatives of 5β-Cholan-24-oic Acid Designed as Drug Absorption Modifiers. Steroids, 832–844; DOI: 10.1016/j.steroids.2013.05.012

Hřibová E, Christelová P, Roux N, Doležel J (2013) A simple and robust approach for genotyping in Musaceae. Acta Hort. 986, 241-246; DOI: —

Švubová R, Ovečka M, Pavlovič A, Slováková L, Blehová A (2013) Cuscuta europea plastid apparatus in various developmental stages: Localization of THF1 protein. Plant Signal Behav 8, e24037; DOI:10.4161/psb.24037

Luo M-C, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, Huo N, Wang Y, Wang J, Chen S, Jorgensen CM, Zhang Y, McGuire PE, Pasternak S, Stein JC, Ware D, Kramer M, McCombie WR, Kianian SF, Martis MM, Mayer KFX, Sehgal SK, Li W, Gill BS, Bevan MW, Šimková H, Doležel J, Weining S, Lazo GR, Anderson OD, Dvorak J (2013) A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. PNAS 110, 7940-7945; DOI:10.1073/pnas.1219082110

Belova T, Zhan B, Wright J, Caccamo M, Asp T, Šimková H, Kent M, Bendixen C, Panitz F, Lien S, Doležel J, Olsen O-A, Sandve SR (2013) Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat. BMC Genomics 14, 222; DOI:10.1186/1471-2164-14-222

Aremu AO, Gruz J, Šubrtová M, Szüčová L, Doležal K, Bairu MW, Finnie JF, Van Staden J (2013) The role of cytokinins on the antioxidant capacity and phenolic acid content during tissue culture and acclimatization of Merwilla plumbea.S. Afr. J. Bot. 86, 172; DOI:10.1016/j.sajb.2013.02.126

Ma L, Jiang S, Lin G, Cai J, Ye X, Chen H, Li M, Li H, Takáč T, Šamaj J, Xu CH (2013) Wound-induced pectin methylesterases enhance banana (Musa spp. AAA) susceptibility to Fusarium oxysporum f. sp. Cubense. J. Exp. Bot., 1-11; DOI:10.1093/jxb/ert088

Franc V, Řehulka P, Padiglia A, Medda R, Floris G, Šebela M (2013) Analysis of the glycosylation pattern of plant copper amine oxidases by MALDI-TOF/TOF mass spectrometry coupled to a manual chromatographic separation of glycans and glycopeptides. Electrophoresis 34, 2357–2367; DOI: 10.1002/elps.201200622

Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar’an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla-Garcia N, Condie JA, Upadhyaya HD, Luo M-C, Thudi M, Gowda CLL, Singh NP, Lichtenzveig J, Gali KK, Rubio J, Nadarajan N, Doležel J, Bansal KC, Xu X, Edwards D, Zhang G, Kahl G, Gil J, Singh KB, Datta SK, Jackson SA, Wang J, Cook DR (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat. Biotechnol. 31, 240-246, DOI:10.1038/nbt.2491

Kopf S, Viola K, Atanasov AG, Jarukamjorn K, Rárová L, Kretschy N, Teichmann M, Vonach C, Saiko P, Giessrigl B, Huttary N, Raab I, Krieger S, Schumacher M, Diederich M, Strnad M, de Martin R, Szekeres T, Jäger W, Dirsch VM, Mikulits W, Grusch M, Dolznig H, Krupitza G (2013) In vitro characterisation of the anti-intravasative properties of the marine product heteronemin. Arch. Toxicol. 87, 1851-1861 ; DOI: 10.1007/s00204-013-1045-1

Viola K, Kopf S, Rarova L, Jarukamjorn K, Kretschy N, Teichmann M, Vonach C, Atanasov AG, Giessrigl B, Huttary N, Raab I, Krieger S,Strnad M, de Martin R, Saiko P, Szekeres T, Knasmüller S, Dirsch VM, Jäger W Grusch M, Dolznig H, Mikulits W, Krupitza G (2013) Xanthohumol attenuates tumour cell-mediated breaching of the lymphendothelial barrier and prevents intravasation and metastasis.Arch. Toxicol. 78, 435-453;DOI: 10.1007/s00204-013-1028-2

Coufalová L, Mrózek L, Rárová L, Plaček L, Opatřilová R, Dohnal J, Kráľová K, Paleta O, Král V, Drašar P, Jampílek J (2013) New propanoyloxy derivatives of 5ß-cholan-24-oic acid as drug absorption modifiers. Steroids 78, 435-453; DOI: 10.1016/j.steroids.2013.02.001

Pečová M, Šebela M , Marková Z, Poláková K, Čuda J, Šafářová K, Zbořil R (2013) Thermostable trypsin conjugates immobilized to biogenic magnetite show a high operational stability and remarkable reusability for protein digestion. Nanotechnology 24, 125102 ;DOI: 10.1088/0957-4484/24/12/125102

Doležel J, Gill BS (2013) Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat. Plant Physiol 161, 252 – 265; DOI: 10.1104/pp.112.205161

Čížková J, Hřibová E, Humplíková L, Christelová P, Suchánková P, Doležel J (2013) Molecular analysis and genomic organization of major DNA satellites in banana (Musa spp.). PLoS ONE 8, e54808; DOI:10.1371/journal.pone.0054808

Shatalina M, Wicker T, Buchmann JP, Oberhaensli S, Šimková H, Doležel J, Keller, B (2013) Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno. Plant Biotechnology Journal 11, 23-32; DOI: 10.1111/pbi.12003

Kopečný D, Končitíková R, Tylichová M, Vigouroux A, Moskalíková H, Soural M, Šebela M, Moréra S (2013) Plant ALDH10 family: Identifying critical residues for substrate specificity and trapping a thiohemiacetal intermediate. J. Biol. Chem. 95, 889-902; DOI: 10.1074/jbc.M112.443952

Prasad A, Pospíšil P (2013) Towards the two-dimensional imaging of spontaneous ultra-weak photon emission from microbial, plant and animal cells. Sci Rep 3, 1211; DOI: 10.1038/srep0121

Cuesta C, Novák O, Ordás RJ, Fernández B, Strnad M, Doležal K, Rodríguez A (2012) Endogenous cytokinin profiles and their relationships to between-family differences during adventitious caulogenesis inn Pinus pineaacotyledons. J. Plant Physiol. 169, 1830–1837; DOI: 10.1016/j.jplph.2012.08.012

Čudejková M, Řehulka J, Pěnčík A, Bergougnoux V, Fellner M (2012) Selection of the maize hybrid tolerant to a high dense planting altered cross-talk between blue light and auxin signaling pathways. Curr. Top. Plant Biol..13, 21-34; DOI: – – –

Bóka B, Adányi N, Virág D, Frébort I, Kiss A (2013) Enzyme based amperometric biosensor for adenine determination. Electroanalysis 25, 237-242; DOI: 10.1002/elan.201200387

Zwanenburg B, Pospíšil T (2013) Structure and activity of strigolactones, New plant hormones with a rich future. Mol. Plant. 6, 38-62; DOI: 10.1093/mp/sss141

Šamajová O, Komis G, Šamaj J (2013) Emerging topics in the cell biology of mitogen-activated protein kinases. Trends Plant Sci. 18, 140-148; DOI: 10.1016/j.tplants.2012.11.004

Pospíšková K, Šafařík I, Šebela M, Kuncová G (2013) Magnetic particles based biosensor for biogenic amines using an optical oxygen sensor as a transducer. Microchim. Acta 180, 311-318; DOI: 10.1007/s00604-012-0932-0

Kubienová L, Kopečný D, Tylichová M, Briozzo P, Skopalová J, Šebela M, Navrátil M, Tâche R, Luhová L, Barroso JB, Petřivalský M (2013) Structural and functional characterization of a plant S-nitrosoglutathione reductase fromm Solanum lycopersicumm. Biochimie 95,889–902; DOI: 10.1016/j.biochi.2012.12.009

Havlíková M, Huličiak M, Bazgier V, Berka K, Kubala M (2013) Fluorone dyes have binding sites on both cytoplasmic and extracellular domains of Na,K-ATPase. Biochim. Biophys. Acta-Biomembr. 1828, 568–576; DOI: 10.1016/j.bbamem.2012.10.029DOI: 10.1016/j.bbamem.2012.10.029

Wasternack C, Forner S,Strnad M, Hause B (2013) Jasmonates in flower and seed development. Biochimie 95, 79-85; DOI:10.1016/j.biochi.2012.06.005,

Malá J, Máchová P, Cvrčková H, Karady M, Novák O, Mikulík J, Dostál J, Strnad M, Doležal K (2013) The role of cytokinins during micropropagation of wych elm. Biologia Plantarum 57, 174-178; DOI:10.1007/s10535-012-0252-6

Brocker C, Vasiliou M, Carpenter S, Carpenter C, Zhang Y, Wang X, Kotchoni SO, Wood AJ, Kirch H, Kopečný D, Nebert DW, Vasiliou V (2013) Aldehyde dehydrogenase (ALDH) superfamily in plants: gene nomenclature and comparative genomics. Planta 236, 189-210; DOI: 10.1007/s00425-012-1749-0

Hulvová H, Galuszka P, Frébortová J, Frébort I (2013) Parasitic funguss Clavicepssas a source for biotechnological production of ergot alkaloids. Biotechnol. Adv. 31, 79-89; DOI:10.1016/j.biotechadv.2012.01.005

Zalabák D, Pospíšilová H, Šmehilová M, Mrízová K, Frébort I, Galuszka P (2013) Genetic engineering of cytokinin metabolism: Prospective way to improve agricultural traits of crop plants. Biotechnol. Adv. 31, 97-117; DOI:10.1016/j.biotechadv.2011.12.003

Šamajová O, Plíhal O, Al-Yousif M, Hirt H, Šamaj J (2013) Improvement of stress tolerance in plants by genetic manipulation of mitogen-activated protein kinases. Biotechnol. Adv. 31, 118-128;DOI:10.1016/j.biotechadv.2011.12.002DOI:10.1016/j.biotechadv.2011.12.002

Raus M, Kopečný D, Šebela M(2013) Program application for the prediction of results of protein digestion by proteolytic enzymes. Chemické listy 107, 44-533

Pechanova O,Takáč T, Šamaj J, Pechan T (2013) Maize proteomics: an insight to biology of important cereal crop. Proteomics 13, 637-662; DOI: 10.1002/pmic.201200275

Kouřil R, Wientjes E, Bultema JB, Croce R, Boekema EJ (2013) High-light vs. low-light: Effect of light acclimation on photosystem II composition and organization in Arabidopsis thaliana. Biochim. Biophys. Acta-Bioenerg. 1827, 411–419 ; DOI: 10.1016/j.bbabio.2012.12.003

2012

Šamajová O, Takáč T, Wangenheim D, Stelzer E, Šamaj J (2012) Update on methods and techniques to study endocytosis in plants. In: Šamaj J (ed) Endocytosis in plants, Springer, Berlin, Heidelberg, 1–36; DOI:10.1007/978-3-642-32463-5_1

Ovečka M, Illés P, Lichtscheidl I, Derksen J, Šamaj J (2012) Endocytosis and vesicular recycling in root hairs and pollen tubes. In: Šamaj J (ed) Endocytosis in plants, Springer, Berlin, Heidelberg, 81–106; DOI:10.1007/978-3-642-32463-5_4

Fulopova V, Gucky T, Grepl M, Soural M (2012) Solid-phase synthesis of trisubstituted benzo [1,4] – diazepin -5-one derivates. Acs Comb Sci 14, 651-656; DOI: 10.1021/co300124q

Bergougnoux V, Zalabák D, Jandová M, Novák O, Wiese-Klinkenberg A, Fellner M (2012) Effect of blue light on endogenous isopentenyladenine and endoreduplication during photomorphogenesis and de-etiolation of tomato (Solanum lycopersicum L.) seedlings. PLoS ONE 7, e45255; DOI: 10.1371/journal.pone.0045255

Richer H, Lieberei R, Strnad M, Novák O, Grúz J, Rensing SA, von Schwarzenberg K (2012) Polyphnins in germination and seedling enol oxidases in Physcomitrella: functional PPO1 knockout modulates cytokinin-dependent developmentin the moss Physcomitrella patens. J Exp Bot 63, 5121-5135; DOI: 10.1093/jxb/ers169

Voegle A, Graeber K, Oracz K, Tarkowska D, Jacquemoud D, Turečková V, Urbanová T, Strnad M , Leubner-Metzger G (2012) Ebryo growth, testa permeability, and endosperm weakeing major targets for the environmentally regulated inhibition of Lepidium sativum seed germination by myrigalone A. J Exp Bot 63, 5337-5350; DOI: 10.1093/jxb/ers197

Stirk WA, Václavíková K, Novák O, Gajdošová S, Kotland O, Motyka V, Strnad M , van Staden J (2012) Involvement of cis-zeatin, dihydrozeatin, and aromatic cytokinins in germination and seedling establishment of maize, oats, and lucerne. J Plant Growth Regul 31, 392-405; DOI: 10.1007/s00344-011-9249-1

Blavet N, Blavet H, Cegan R, Zemp N, Zdanska J, Janoušek B, Hobza R , Widmer A (2012) Comparative analysis of a plant pseudoautosomal region (PAR) in Silene latifolia with the corresponding S-vulgaris autosome. BMC Genomics 13, Art. No: 226; DOI: 10.1186/1471-2164-13-226

Podwyszyńska M, Węgrzynowicz-Lesiak E, Doležal K, Krekule J, Strnad M, Saniewski M (2012) New cytokinins – meta-methoxytopolins in micropropagation of Cotinus coggygria Scop. ‘Royal Purple’. Propag. Ornam. Plants 12, 220-228; DOI: — (link here)

Chan T, Shimizu Y, Pospíšil P, Nijo N, Fujiwara A, Taninaka Y, Ishikawa T, Hori H, Nanba D, Imai A, Morita N, Yoshioka-Nishimura M, Izumi Y, Yamamoto Y, Kobayashi H, Mizusawa N, Wada H, Yamamoto Y (2012) Quality control of photosystem II: lipid peroxidation accelerates photoinhibition under excessive illumination. PLoS ONE 7, e52100; DOI: 10.1371/journal.pone.0052100

Bielach A, Podlešáková K, Marhavy P, Duclercq J, Cuesta C, Müller B, Grunewald W, Tarkowski P, Benková E (2012) Spatiotemporal regulation of lateralroot organogenesis in Arabidopsis by cytokinin. Plant Cell 24, 3967-3981; DOI: 10.1105/tpc.112.103044

Bartoš J, Vlček Č, Choulet F, Džunková M, Cviková K, Šafář J, Šimková H, Pačes J, Strnad H, Sourdille P, Bergés H, Cattonaro F, Feuillet C, Doležel J (2012) Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat. BMC Plant Biol. 12, 155; DOI: 10.1186/1471-2229-12-155

Rastogi A, Pospíšil P (2012) Production of hydrogen peroxide and hydroxyl radical in potato tuber during the necrotrophic phase of hemibiotrophic pathogen Phytophthora infestans infection. J. Photochem. Photobiol. B-Biol. 117, 202-206; DOI: 10.1016/j.jphotobiol.2012.10.001

Kvasnica M, Rárová L, Oklešťková J, Buděšínský M, Kohout L (2012) Synthesis and cytotoxic activities of estrone and estradiol cis-dichloroplatinum(II) complexes. Bioorg. Med. Chem. 20, 6969-6978; DOI: 10.1016/j.bmc.2012.10.013

Béres T, Gemrotová M, Tarkowski P Béres T, Gemrotová M, Tarkowski P, Ganzera M, Maier V, Friedecký D, Dessoy MA, Wessjohann LA, Spíchal L, Strnad M, Doležal K(2012) Analysis of cytokinin nucleotides by capillary zone electrophoresis with diode array and mass spectrometric detection in a recombinant enzymee in vitrooreaction. Anal. Chim. Acta 751, 176–181; DOI: 10.1016/j.aca.2012.08.049

Wasternack C, Goetz S, Hellwege A, Forner S, Strnad M, Hause B (2012) Another JA/COI1-independent role of OPDA detected in tomato embryo development. Plant Signal. Behav. 7, 1349 – 1353; DOI: 10.4161/psb.21551

Prokudina EA, Havlíček L, Al-Maharik N, Lapčík O, Strnad M, Grúz J (2012) Rapid UPLC-ESI-MS/MS method for the analysis of isoflavonoids and other phenylpropanoids . J. Food Compos. Anal. 26, 36–42; DOI: 10.1016/j.jfca.2011.12.001

Šamec D, Kremer D, Grúz J, Grubešić RJ, Piljac-Žegarac J (2012) Rhamnus intermediaaSteud. et Hochst. – A new source of bioactive phytochemicals. Croat. Chem. Acta 85, 125–129; DOI: 10.5562/cca1946

Ding ZJ, Wang BJ, Moreno I, Dupláková N, Simon S, Carraro N, Reemmer J, Pěnčík A, Chen X, Tejos R, Skupa P, Pollmann S, Mravec J, Petrášek J, Zažímalová E, Honys D, Rolčík J, Murphy A, Orellana A, Geisler M, Friml J (2012) ER-localized auxin transporter PIN8 regulates auxin homeostasis and male gametophyte development inn Arabidopsiss. Nat. Commun. 3, Article number 941; DOI: 10.1038/ncomms1941

Yadav DK, Pospíšil P(2012) Evidence on the formation of singlet oxygen in the donor side photoinhibition of photosystem II: EPR spin-trapping study. PLoS ONE 7, e45883; DOI: 10.1371/journal.pone.0045883

Prasad A, Pospíšil P(2012) Ultraweak photon emission induced by visible light and ultraviolet A radiation via photoactivated skin chromophores: in vivoocharge coupled device imaging. J. Biomed. Opt. 17, 085004; DOI: 10.1117/1.JBO.17.8.085004

Nie X, Li B, Wang L, Liu P, Biradar SS, Li T, Doležel J, Edwards D, Luo M, Weining S (2012) Development of chromosome-arm-specific microsatellite markers inn Triticum aestivumm (Poaceae) using NGS technology. Am. J. Bot. 9, e369-e371; DOI: 10.3732/ajb.1200077

Martis M, Klemme S, Banaei-Moghaddam AM, Blattner FR, Macas J, Schmutzer T, Scholz U, Gundlach H, Wicker T, Šimková H, Novák P, Neumann P, Kubaláková M, Bauer E, Haseneyer G, Fuchs J, Doležel J, Stein N, Mayer KFX, Houben A (2012) Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences. PNAS 109, 13343-13346; DOI: 10.1073/pnas.1204237109

Sehgal SK, Li W, Rabinowicz PD, Chan A, Šimková H, Doležel J, Gill BS (2012) Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat. BMC Plant Biol. 12, 64; DOI: 10.1186/1471-2229-12-64

Kantar M, Akpinar BA, Valárik M, Lucas SJ, Doležel J, Hernández P, Budak H (2012) Subgenomic analysis of microRNAs in polyploid wheat. Funct. Integr. Genomics 12, 465-479; DOI: 10.1007/s10142-012-0285-0

Doležel J, Vrána J, Šafář J, Bartoš J, Kubaláková M, Šimková H(2012) Chromosomes in the flow to simplify genome analysis. Funct. Integr. Genomics 12, 397-416; DOI: 10.1007/s10142-012-0293-0

Vrána J, Šimková H, Kubaláková M, Číhalíková J, Doležel JJ(2012) Flow cytometric chromosome sorting in plants: The next generation. Methods 57, 331-337; DOI:10.1016/j.ymeth.2012.03.006

Ovecka M, Bahaji A, Muńoz FJ, Almagro G, Ezquer I, Baroja-Fernández E, Li J, Pozueta-Romero J (2012) A sensitive method for confocal fluorescence microscopic visualization of starch granules in iodine stained samples. Plant Signal. Behav. 7, 1146 – 1150; DOI: 10.4161/psb.21370

Rárová L, Zahler S, Liebl J, Kryštof V, Sedlák D, Bartůněk P, Kohout L, Strnad M(2012) Brassinosteroids inhibitt in vitrooangiogenesis in human endothelial cells. Steroids 77, 1502 – 1509; DOI:10.1016/j.steroids.2012.08.01

Dolečková I, Rárová L, Grúz J, Vondrusová M, Strnad M, Kryštof V (2012) Antiproliferative and antiangiogenic effects of flavone eupatorin, an active constituent of chloroform extract off Orthosiphon stamineuss leaves. Fitoterapia 83, 1000–1007; DOI: 10.1016/j.fitote.2012.06.002

Steigerová J, Rárová L, Oklešt’ková J, Křížová K, Levková M, Šváchová M, Kolář Z, Strnad M(2012) Mechanisms of natural brassinosteroid-induced apoptosis of prostate cancer cells. Food Chem. Toxicol. 50, 4068–4076; DOI:10.1016/j.fct.2012.08.031

Nair J, Rárová L, Strnad M, Bastida J, van Staden J (2012) Apoptosis-inducing effects of distichamine and narciprimine, rare alkaloids of the plant family Amaryllidaceae. Bioorg. Med. Chem. Lett. 22, 6195–6199; DOI:10.1016/j.bmcl.2012.08.005

Vida N, Svobodová H, Rárová L, Drašar P, Šaman D, Cvačka J, Wimmer Z (2012) Polyamine conjugates of stigmasterol. Steroids 77, 1212–1218; DOI:10.1016/j.steroids.2012.07.009

Ohnoutková L, Zítka O, Mrízová K, Vašková J, Galuszka P, Cernei N, Smedley MA, Harwood WA, Adam V, Kizek R (2012) Electrophoretic and chromatographic evaluation of transgenic barley expressing a bacterial dihydrodipicolinate synthase. Electrophoresis 33, 2365–2373; DOI:10.1002/elps.201200033

Tomaštíková E, Cenklová V, Kohoutová L, Petrovská B, Váchová L, Halada P, Kočárová G, Binarová P (2012) Interactions of annArabidopsissRanBPM homologue with LisH-CTLH domain proteins revealed high conservation of CTLH complexes in eukaryotes. BMC Plant Biol. 12, 83; DOI:10.1186/1471-2229-12-83

Aremu AO, Bairu MW, Szüčová L, Doležal KK, Finnie JF, Van Staden J (2012) Assessment of the role off metaa-topolins on in vitro produced phenolics and acclimatization competence of micropropagated ‘Williams’ banana. Acta Physiol. Plant. 34, 2265-2273; DOI:10.1007/s11738-012-1027-6

Aremu AO, Bairu MW, Szüčová L, Finnie JF, Van Staden J (2012) The role off metaa-topolins on the photosynthetic pigment profiles and foliar structures of micropropagated ‘Williams’ bananas. J. Plant Physiol. 169, 1530–1541; DOI:10.1016/j.jplph.2012.06.006

Aremu AO, Bairu MW, Novák O, Plačková L, Zatloukal M, Doležal K, Finnie JF, Strnad M, Van Staden J (2012) Physiological responses and endogenous cytokinin profiles of tissue-cultured ‘Williams’ bananas in relation to roscovitine and an inhibitor of cytokinin oxidase/dehydrogenase (INCYDE) treatments. Planta 236, 1775-1790; DOI:10.1007/s00425-012-1721-z

Habib SH, Ooi S-E, Novák O, Tarkowská D, Rolčík J,Doležal K, Syed-Alwee SSR, Ho C-L, Namasivayam P (2012) Comparative mineral and hormonal analyses of wild type and TLS somaclonal variant derived from oil palm ((Elaeis guineensiss Jacq. var. tenera) tissue culture. Plant Growth Regul. 68, 313-317; DOI:10.1007/s10725-012-9707-1

Ma L, Xie L, Lin G, Jiang S, Chen H, Li H, Takáč T, Šamaj J, Xu C (2012) Histological changes and differences in activities of some antioxidant enzymes and hydrogen peroxide content during somatic embryogenesis off MusaaAAA cv. Yueyoukang 1. Sci. Hortic. 144, 87–92; DOI:10.1016/j.scienta.2012.06.039

Jakobson I, Reis D, Tiidema A, Peusha H, Timofejeva L, Valárik M, Kladivová M, Šimková H, Doležel J, Järve K (2012) Fine mapping, phenotypic characterization and validation of non-race-specific resistance to powdery mildew in a wheat––Triticum militinaeeintrogression line. Theor. Appl. Genet. 125, 609-623; DOI:10.1007/s00122-012-1856-0

Ježilová E, Fellner M, Bergougnoux V, Špundová M(2012) Is the rate of photosynthesis under blue light altered in thee 7B-11tomato mutant? Photosynthetica 50, 477-480; DOI:10.1007/s11099-012-0047-1

D’Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengellé J, Rodier-Goud M, Alberti A, Bernard M, Correa M, Ayyampalayam S, Mckain MR, Leebens-Mack J, Burgess D, Freeling M, Mbéguié-A-Mbéguié D, Chabannes M, Wicker T, Panaud O, Barbosa J, Hribova E, Heslop-Harrison P, Habas R, Rivallan R, Francois P, Poiron C Kilian A, Burthia D, Jenny C, Bakry F, Brown S, Guignon V, Kema G, Dita M, Waalwijk C, Joseph S, Dievart A, Jaillon O, Leclercq J, Argout X, Lyons E, Almeida A, Jeridi M, Dolezel J, Roux N, Risterucci AM, Weissenbach J, Ruiz M, Glaszmann JC, Quétier F, Yahiaoui N, Wincker P (2012) The banana (Musa acuminataa) genome and the evolution of monocotyledonous plants. Nature 488, 213–217; DOI:10.1038/nature11241

Kováčik J, Klejdus B, Hedbavny J, Štork F, Grúz J(2012) Modulation of copper uptake and toxicity by abiotic stresses inn Matricaria chamomillaaplants. J. Agric. Food Chem. 60, 6755–6763; DOI:10.1021/jf3013426

Novák O, Hényková E, Sairanen I, Kowalczyk M, Pospíšil T, Ljung K (2012) Tissue specific profiling of thee Arabidopsis thalianaaauxin metabolome. Plant J. 72, 523 – 536; DOI:10.1111/j.1365-313X.2012.05085.x

Chen T, Wang X, von Wangenheim D, Zheng M, Šamaj J, Ji W, Lin J (2012) Probing and tracking organelles in living plant cells. Protoplasma 249 (Suppl 2), 157-167; DOI:10.1007/s00709-011-0364-4, Erratum: DOI:10.1007/s00709-012-0376-8

Chalupová J, Sedlářová M, Helmel M, Řehulka P, Marchetti-Deschmann M, Allmaier G, Šebela M(2012) MALDI-based intact spore mass spectrometry of downy and powdery mildews. J. Mass Spectrom. 47, 978–986; DOI:10.1002/jms.3046

Svačinová J, Novák O, Plačková L, Lenobel R, Holík J, Strnad M, Doležal K(2012) A new approach for cytokinin isolation from Arabidopsis tissues using miniaturized purification: pipette tip solid-phase extraction. Plant Methods 8, 17; DOI:10.1186/1746-4811-8-17

Podlešáková K, Zalabák D, Čudejková M, Plíhal O, Szüčová L, Doležal K, Spíchal L, Strnad M, Galuszka P (2012) Novel Cytokinin Derivatives Do Not Show Negative Effects on Root Growth and Proliferation in Submicromolar Range. PLoS ONE 7(6): e39293; DOI:10.1371/journal.pone.0039293

Aremu AO, Bairu MW, Szüčová L, Doležal K, Finnie JF, Van Staden J (2012) Shoot and root proliferation in ‘Williams’ banana: are the topolins better cytokinins? Plant Cell Tissue Organ Cult. 111, 209-218; DOI:10.1007/s11240-012-0187-9

Spíchal L(2012) Cytokinins – recent news and views of evolutionally old molecules. Funct. Plant Biol. 39, 267-284; DOI:10.1071/FP11276

Kapras V, Slavíčková A, Šťastná E, Vyklický L, Vales K, Chodounská H (2012) Synthesis of deuterium labeled NMDA receptor inhibitor – 20-Oxo-55ß-[9,12,12–²H₃]pregnan-33?-yl–L-glutamyl 1-ester. Steroids 77, 282–287; DOI:10.1016/j.steroids.2011.12.019

Kováčik J, Grúz J, Klejdus B, Štork F, Hedbavny J (2012) Accumulation of metals and selected nutritional parameters in the field-grown chamomile anthodia. Food Chem. 131, 55–62; DOI:10.1016/j.foodchem.2011.08.028

Brcko A, Pěnčík A, Magnus V, Prebeg T, Mlinarić S, Antunović J, Lepeduš H, Cesar V, Strnad M, Rolčík J, Salopek-Sondi B (2012) Endogenous auxin profile in the Christmas rose (Helleborus nigerrL.) Flower and fruit: free and amide conjugated IAAJ. Plant growth regul. 31, 63-78; DOI:10.1007/s00344-011-9220-1

Lukaszewski AJ, Kopecký D, Linc G (2012) Inversions of chromosome arms 4AL and 2BS in wheat invert the patterns of chiasma distribution. Chromosoma 121, 201-208; DOI:10.1007/s00412-011-0354-5

Tarkowská D, Filek M, Biesaga-Kościelniak J, Marcińska I, Macháčková I, Krekule J, Strnad M(2012) Cytokinins in shoot apices offBrassica napussplants during vernalization. Plant Sci. 187, 105–112; DOI:10.1016/j.plantsci.2012.02.003

Kováčik J, Štork F, Klejdus B, Grúz J, Hedbavny J (2012) Effect of metabolic regulators on aluminium uptake and toxicity innMatricaria chamomillaa plants. Plant Physiol. Biochem. 54, 140–148; DOI:10.1016/j.plaphy.2012.02.018

Hlavinka J, Nožková-Hlaváčková VV, Floková K, Novák O, Nauš J(2012) Jasmonic acid accumulation and systemic photosynthetic and electrical changes in locally burned wild type tomato, ABA-deficientt sitienssmutants andd sitiensspre-treated by ABA. Plant Physiol. Biochem. 54, 89–96; DOI:10.1016/j.plaphy.2012.02.014

Stirk WA, Novák O, Žižková E, Motyka V, Strnad M,van Staden J (2012) Comparison of endogenous cytokinins and cytokinin oxidase/dehydrogenase activity in germinating and thermoinhibitedd Tagetes minutaa achenes. J. Plant Physiol. 169, 696–703; DOI:10.1016/j.jplph.2012.01.013

Long CL, Held M, Hayward A, Nisler J, Spíchal L, Emery RJN, Moffatt BA, Guinel FC (2012) Seed development, seed germination and seedling growth in the R500 (sym16))pea mutant are not directly linked to altered cytokinin homeostasis. Physiol. Plant. 145, 341-359; DOI: 10.1111/j.1399-3054.2012.01594.x

Borovská J, Vyklický V, Šťastná E, Kapras V, Slavíková B, Horák M, Chodounská H, Vyklický L Jr (2012) Access of inhibitory neurosteroids to the NMDA receptor. Br. J. Pharmacol. 166, 1069-1083; DOI:10.1111/j.1476-5381.2011.01816.x

Kenderešová L, Staňová A, Pavlovkin J, Ďurišová E,Nadubinská M, Čiamporová M, Ovečka M(2012) Early Znn²⁺⁺-induced effects on the membrane potential account for primary heavy metal susceptibility in tolerant and sensitivee Arabidopsissspecies. Ann. Bot. 110, 445-459; DOI:10.1093/aob/mcs111

Franc V, Šebela M, Řehulka P, Končitíková R, Lenobel R, Madzak C, Kopečný D(2012) Analysis off N-glycosylation in maize cytokinin oxidase/dehydrogenase 1 using a manual microgradient chromatographic separation coupled offline to MALDI-TOF/TOF mass spectrometry. J. Proteomics 75, 4027–4037; DOI: 10.1016/j.jprot.2012.05.013

Frömmel J, Soural M, Tylichová M, Kopečný D, Demo G, Wimmerová M, Šebela M(2012) Plant aminoaldehyde dehydrogenases oxidize a wide range of nitrogenous heterocyclic aldehydes. Amino Acids, 505-516; DOI: 10.1007/s00726-011-1174-x

Staňová A, Ďurišová E, Banásová V, Gurinová E, Nadubinská M, Kenderešová L, Ovečka M, Čiamporová M (2012) Root system morphology and primary root anatomy in natural non-metallicolous and metallicolous populations of threee Arabidopsissspecies differing in heavy metal tolerance. Biologia 67, 505-516; DOI:10.2478/s11756-012-0040-y

Li R, Liu P, Wan Y, Chen T, Wang Q, Mettbach U, Baluška F,Šamaj J, Fang X, Lucas WJ, Lin J (2012) A membrane microdomain-associated protein, AtFlot1, is involved in a clathrin-independent endocytic pathway and is required for seedling development innArabidopsiss. Plant Cell 24, 2105-2122; DOI:10.1105/tpc.112.095695

Takáč T, Pechan T, Šamajová O, Ovečka M, Richter H, Eck C, Niehaus K, Šamaj J(2012) Wortmannin Treatment Induces Changes in Arabidopsis Root Proteome and Post-Golgi Compartments. J. Proteome Res. 11, 3127–3142; DOI:10.1021/pr201111n

Barbez E, Kubeš M, Rolčík J, Béziat C, Pěnčík A, Wang B, Rosquete MR, Zhu J, Dobrev PI, Lee Y, Zažímalová E, Petrášek J, Geisler M, Friml J, Kleine-Vehn J (2012) A novel putative auxin carrier family regulates intracellular auxin homeostasis in plants. Nature 485, 119–122; DOI:10.1038/nature11001

Kasparek P, Krenek P, Buryova H, Suchanova S, Beck IM, Sedlacek R (2012) Transgenic mouse model expressing tdTomato under involucrin promoter as a tool for analysis of epidermal differentiation and wound healing. Transgenic Res. 21, 683-689 ; DOI: 10.1007/s11248-011-9567-x

Unger C, Popescu R, Giessrigl B, Rarova L, Herbacek I, Seelinger M, Diaz R, Wallnöfer B, Fritzer-Szekeres M, Szekeres T, Frisch R,Doležal K, Strnad M, De Martin R, Grusch M, Kopp B, Krupitza G (2012) An apolar extract of Critonia morifolia inhibits c-Myc, cyclin D1, Cdc25A, Cdc25B, Cdc25C and Akt and induces apoptosis. Int. J. Oncol. 40, 2131-2139; DOI:10.3892/ijo.2012.1412

Wendel JF, Greilhuber J, Doležel J, Leitch IJ (eds.) (2012) Plant Genome Diversity, Vol. 1, pp. 279; Springer, ISBN 978-3-7091-1129-1

Lucas SJ, Šimková H, Šafář J, Jurman I, Cattonaro F, Vautrin S, Bellec A, Berges H, Doležel J, Budak H (2012) Functional features of a single chromosome arm in wheat (1AL) determined from its structure. Funct. Integr. Genomics 12, 173-182; DOI:10.1007/s10142-011-0250-3

Tomaszewski C, Byrne SL, Foito A, Kildea S, Kopecký D, Doležel J, Heslop-Harrison JS, Stewart D, Barth S (2012) Genetic linkage mapping in an F2 perennial ryegrass population using DArT markers. Plant Breeding 131, 345-349; DOI:10.1111/j.1439-0523.2011.01944.x

Yadav DK, Pospíšil P(2012) Role of chloride ion in hydroxyl radical production in photosystem II under heat stress: Electron paramagnetic resonance spin-trapping study. J. Bioenerg. Biomembr. 44, 365-372; DOI:10.1007/s10863-012-9433-4

Sinha RK, Komenda J, Knoppová J, Sedlářová M, Pospíšil P(2012) Small CAB-like proteins prevent formation of singlet oxygen in the damaged Photosystem II complex of the cyanobacteriummSynechocystis sp.. PCC 6803. Plant Cell Environ 35, 806–818; DOI:10.1111/j.1365-3040.2011.02454.x

Cegan R, Vyskot B, Kejnovsky E, Kubat Z, Blavet H, Šafář J, Doležel J, Blavet N, Hobza R (2012) Genomic diversity in two related plant species with and without sex chromosomes — Silene latifoliaa andd S. vulgariss. PLoS ONE 7(2): e31898; DOI:10.1371/journal.pone.0031898

Berkman PJ, Skarshewski A, Manoli S, Lorenc MT, Stiller J, Smits L, Lai K, Campbell E, Kubaláková M, Šimková H, Batley J,Doležel J, Hernandez P, Edwards D (2012) Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation. Theor. Appl. Genet. 124, 423-432; DOI:10.1007/s00122-011-1717-2

Fluch S, Kopecky D, Burg K, Šimková H, Taudien S, Petzold A, Kubaláková M, Platzer M, Berenyi M, Krainer S, Doležel J, Lelley T (2012) Sequence composition and gene content of the short arm of ryee(Secale cereale))chromosome 1. PLoS ONE 7(2): e30784; DOI:10.1371/journal.pone.0030784

Pérez-Díaz JOH, Rárová L, Munoz Ocampo JP, Magana-Vergara NE, Farfán N, Strnad M, Santillán R (2012) Synthesis and Biological activity of 23-Ethylidene-26-hydroxy-22-oxocholestane derivatives from spirostanic sapogenins. Eur. J. Med. Chem. 51, 67–78; DOI:10.1016/j.ejmech.2012.02.020

Pospíšil P(2012) Molecular mechanisms of production and scavenging of reactive oxygen species by photosystem II. Biochim. Biophys. Acta 1817, 218-231; DOI:10.1016/j.bbabio.2011.05.017

Petrovská B, Cenklová V, Pochylová Z, Kourová H, Doskočilová A, Plíhal O, Binarová L, Binarová P (2012) Plant Aurora kinases play a role in maintenance of primary meristems and control of endoreduplication. New Phytol. 193, 590–604; DOI:10.1111/j.1469-8137.2011.03989.x

Hernandez P, Martis M, Dorado G, Pfeifer M, Gálvez S, Schaaf S, Jouve N, Šimková H, Valárik M, Doležel J, Mayer KFX (2012) Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content. Plant J. 69, 77-386; DOI:10.1111/j.1365-313X.2011.04808.x

Baird JH, Kopecký D, Lukaszewski AJ, Green RL, Bartoš J, Doležel J(2012) Genetic diversity of turf-type tall fescue using diversity arrays technology. Crop Sci. 52, 408-412; DOI:10.2135/cropsci2011.02.0106

Uváčková Ľ, Takáč T, Boehm N, Obert B, Šamaj J(2012) Proteomic and biochemical analysis of maize anthers after cold pretreatment and induction of androgenesis reveals an important role of anti-oxidative enzymes. J. Proteomics 75, 1886–1894; DOI:10.1016/j.jprot.2011.12.033

Bleho J, Obert B, Takáč T, Petrovská B, Heym C, Menzel D, Šamaj J(2012) ER disruption and GFP degradation during non-regenerable transformation of flax withh Agrobacterium tumefacienss. Protoplasma 249, 53-63; DOI: 10.1007/s00709-010-0261-2

Aremu AO, Bairu MW, Doležal K, Finnie JF, Van Staden J (2012) Topolins: A panacea to plant tissue culture challenges? Plant Cell Tissue Organ Cult. 108, 1-166; DOI:10.1007/s11240-011-0007-7

2011

The average impact factor of the magazines that published papers from the Centre of Region Hana was 3,954 in 2011. Magazines with the highest impact factor (based on results from 2010) were Current Opinion in Plant Biology (IF 9,437) and Plant Cell (IF 9,396) in which three articles were published.

Rustenholz C, Choulet F, Laugier C, Šafář J, Šimková H, Doležel J, Magni F, Scalabrin S, Cattonaro F, Vautrin S, Bellec A, Berges H, Feuillet C, Paux E (2011) A 3000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat. Plant Physiol. 157, 1596-1608; DOI:10.1104/pp.111.183921

Prasad A, Pospíšil P (2011) Two-dimensional imaging of spontaneous ultra-weak photon emission from the human skin: role of reactive oxygen species. J. Biophotonics 4, 840-849; DOI:10.1002/jbio.201100073

Karady M, Novák O, Horna A, Strnad M, Doležal K (2011) High performance liquid chromatography-electrochemistry- electrospray ionization mass spectrometry (HPLC/EC/ESI-MS) for detection and characterization of roscovitine oxidation products. Electroanalysis 23, 2898-2905; DOI:10.1002/elan.201100383

Petříková K, Neugebauerová J, Dušek K, Dušková E (2011) Metodika pěstování léčivých rostlin: puškvorce obecného, černohlávku obecného a smilu písečného. Certifikovaná metodika pro praxi. Mendelova univerzita v Brně, ISBN 978-80-7375-523-22

Munoz-Amatriaín M, Moscou MJ, Bhat PR, Svensson JT, Bartoš J, Suchánková P, Šimková H, Endo TR, Fenton RD, Lonardi S, Castillo AM, Chao S, Cistué L, Cuesta-Marcos A, Forrest KL, Hayden MJ, Hayes PM, Horsley RD, Makoto K, Moody D, Sato K, Vallés MP, Wulff BBH, Muehlbauer GJ, Doležel J, Close TJ (2011) An improved consensus linkage map of barley based on flow-sorted chromosomes and single nucleotide polymorphism markers. Plant Genome 4, 238-249; DOI:10.3835/plantgenome2011.08.0023

Molnár I, Kubaláková M, Šimková H, Cseh A, Molnár-Láng M, Doležel J (2011) Chromosome isolation by flow sorting inn Aegilops umbellulataaandd Ae. comosaaand their allotetraploid hybridss Ae. biuncialissandd Ae. geniculataa. PLoS One 6(11): e27708; DOI:10.1371/journal.pone.0027708

Cseh A, Kruppa K, Molnár I, Rakszegi M, Doležel J, Molnár-Láng M (2011) Characterization of a new 4BS.7HL wheat-barley translocation line using GISH, FISH, and SSR markers and its effect on the ß-glucan content of wheat. Genome 54, 795-804; DOI:10.1139/G11-044

Mik V, Szüčová L, Spíchal L, Plíhal O, Nisler J, Zahajská L, Doležal K, Strnad M (2011) N9-Substituted NN⁶-[(3-methylbut-2-en-1- yl)amino]purine derivatives and their biological activity in selected cytokinin bioassays. Bioorg. Med. Chem. 19, 7244–7251; DOI: 10.1016/j.bmc.2011.09.052

Vitulo N, Albiero A, Forcato C, Campagna D, Dal Pero F, Bagnaresi P, Colaiacovo M, Faccioli P, Lamontanara A, Šimková H, Kubaláková M, Perrotta G, Facella P, Lopez L, Pietrella M, Gianese G, Doležel J, Giuliano G, Cattivelli L, Valle G, Stanca AM (2011) First survey of the wheat chromosome 5A composition through a next generation sequencing approach. PLoS One 6(10): e26421; DOI: 10.1371/journal.pone.0026421

Parlange F, Oberhaensli S, Breen J, Platzer M, Taudien S, Šimková H, Wicker T, Doležel J, Keller B (2011) A major invasion of transposable elements accounts for the large size of thee Blumeria graminissf.sp.. triticiigenome. Funct. Integr. Genomics 11, 671-677; DOI:10.1007/s10142-011-0240-5

Christelová P, Valárik M, Hřibová E, Van den Houwe I, Channeliére S, Roux N, Doležel J (2011) A platform for efficient genotyping inn Musaausing microsatellite markers. AoB PLANTS 2011 plr024; DOI: 10.1093/aobpla/plr024

Zatloukalová P, Hřibová E, Kubaláková M, Suchánková P, Šimková H, Adoración C, Kahl G, Millán T, Doležel J (2011) Integration of genetic and physical maps of the chickpea ((Cicer arietinum L.))genome using flow-sorted chromosomes. Chromosome Res. 19, 729-739; DOI: 10.1007/s10577-011-9235-2

Berkman PJ, Skarshewski A, Lorenc MT, Lai K, Duran Ch, Ling EYS, Stiller J, Smits L, Imelfort M, Manoli S, McKenzie M,Kubaláková M, Šimková H, Batley J, Fleury D, Doležel J, Edwards D (2011) Sequencing and assembly of low copy and genic regions of isolated /Triticum aestivum/ chromosome arm 7DS. Plant Biotechnol. J. 9, 768-775; DOI: 10.1111/j.1467-7652.2010.00587.x

Reiss K, Meyer-Hoffert U, Fischer J, Sperrhacke M, Wu Z, Dimitrieva O, Křenek P, Suchanova S, Buryova H, Brauer R, Sedlacek R (2011) Expression and regulation of murine SPINK12, a potential orthologue of human LEKTI2. Exp. Dermatol. 20, 905-910; DOI:10.1111/j.1600-0625.2011.01355.x

Pospíšil P (2011) Enzymatic function of cytochrome (2011) Enzymatic function of cytochrome b₅₅₉in photosystem II. J. Photochem. Photobiol. B-Biol. 104, 341-347; DOI: 10.1016/j.jphotobiol.2011.02.013

Prasad A, Pospisil P (2011) Linoleic acid-induced ultra-weak photon emission from Chlamydomonas reinhardtii as a tool for monitoring of lipid peroxidation in the cell membranes. PLoS One 6, e22345; DOI: 10.1371/journal.pone.0022345

Rastogi A, Pospíšil P (2011) Spontaneous ultraweak photon emission imaging of oxidative metabolic processes in human skin: effect of molecular oxygen and antioxidant defense system. J. Biomed. Opt. 16, 096005; DOI: 10.1117/1.3616135

Kyseláková H, Prokopová J, Nauš J, Kyseláková H, Prokopová J, Novák O, Navrátil M, Šafářová D, Špundová M, Ilík P (2011) Photosynthetic alterations of pea leaves infected systemically by pea enation mosaic virus: A coordinated decrease in efficiencies of COO₂assimilation and photosystem II photochemistry. Plant Physiol. Biochem. 49, 1279–1289; DOI: 10.1016/j.plaphy.2011.08.006

Komis G, Illés P, Beck M, Šamaj J (2011) Microtubules and mitogen-activated protein kinase signalling. Curr. Opin. Plant Biol. 14, 650–657; DOI: 10.1016/j.pbi.2011.07.008

Xu C, Zhao L, Pan X, Šamaj J(2011) Developmental Localization and Methylesterification of Pectin Epitopes during Somatic Embryogenesis of Banana (Musa spp. AAA). PLoS One 2011;6(8):e22992; DOI: 10.1371/journal.pone.0022992

Vleeshouwers V, Finkers R, Budding D, Visser M, Jacobs M, van Berloo R, Pel M, Champouret N, Bakker E, Křenek P, Rietman H, Huigen D, Hoekstra R, Goverse A, Vosman B, Jacobsen E, Visser R (2011) SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanum species. BMC Plant Biol. 11, 116; DOI: 10.1186/1471-2229-11-116

Kopečný D, Tylichová M, Snégaroff J, Popelková H, Šebela M (2011) Carboxylate and aromatic active-site residues are determinants of high affinity binding of ?-aminoaldehydes to plant aminoaldehyde dehydrogenases. FEBS J. 278, 3130-3139; DOI: 10.1111/j.1742-4658.2011.08239.x

Kowalska M, Tian T, Šehilová M, Galuszka P, Frébort I, Napier R, Dale N (2011) Prussian Blue acts as a mediator in a reagentless cytokinin biosensor. Anal. Chim. Acta 701, 218-22; DOI: 10.1016/j.aca.2011.06.018

Kryštof V, Rárová L, Liebl J, Zahler S, Jorda R, Voller J, Cankař P (2011) The selective P-TEFb inhibitor CAN508 targets angiogenesis. Eur. J. Med. Chem. 46, 4289-4294; DOI: 10.1016/j.ejmech.2011.06.035

Mahelka V, Kopecký D, Paštová L (2011) On the genome constitution and evolution of intermediate wheatgrass (Thinopyrum intermediumm: Poaceae, Triticeae). BMC Evol. Biol. 11, 127; DOI: 10.1186/1471-2148-11-127

Pan X, Yang X, Lin G, Zou R, Chen H, Šamaj J, Xu C (2011) Ultrastructural changes and the distribution of arabinogalactan proteins during somatic embryogenesis of banana (Musaaspp. AAA cv. ‘Yueyoukang 1’). Physiol. Plant. 142, 1399-3054;spp. AAA cv. ‘Yueyoukang 1’). Physiol. Plant. 142, 1399-3054; DOI: 10.1111/j.1399-3054.2011.01478.x

Wicker T, Mayer KFX, Gundlach H, Martis M, Steuernagel B, Scholz U, Šimková H, Kubaláková M, Choulet F, Taudien S, Platzer M, Feuillet C, Fahima T, Budak H, Doležel J, Keller B, Stein N (2011) Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell 23, 1706-1718; DOI: 10.1105/tpc.111.086629

Xie D, Ma L, Šamaj J, Xu C (2011) Immunohistochemical analysis of cell wall hydroxyproline-rich glycoproteins in the roots of resistant and susceptible wax gourd cultivars in response to Fusarium oxysporum f. sp. Benincasae infection and fusaric acid treatment. Plant Cell Reports 30, 1555-1569; DOI: 10.1007/s00299-011-1069-z

Jorda R, Havlíček L, McNae IW, Walkinshaw MD, Voller J, Šturc A, Navrátilová J, Kuzma M, Mistrík M, Bártek J, Strnad M, Kryštof V (2011) Pyrazolo[4,3-d]pyrimidine bioisostere of roscovitine: evaluation of a novel selective inhibitor of cyclin-dependent kinases with antiproliferative activity. J. Med. Chem. 54, 2980-2993; DOI: 10.1021/jm200064p

Maj J, Morzycki JW, Rárová L, Oklešťková J, Strnad M, Wojtkielewicz A (2011) Synthesis and biological activity of 22-deoxo-23-oxa analogues of saponin OSW-1. J. Med. Chem. 54, 3298-3305; DOI: 10.1021/jm101648h

Mrózek L, Dvořáková L, Mandelová Z, Rárová L, Řezáčová A, Plaček L, Opatřilová R, Dohnal J, Král V, Drašar P, Jampílek J (2011) Investigation of new acyloxy derivatives of cholic acid and their esters as drug absorption modifiers. Steroids 76, 1082-1097; DOI: 10.1016/j.steroids.2011.04.014

Doskočilová A, Plíhal O, Volc J, Chumová J, Kourová H, Halada P, Petrovská B, Binarová P (2011) A nodulin/glutamine synthetase-like fusion protein is implicated in the regulation of root morphogenesis and in signalling triggered by flagellin. Planta 234, 459-476; DOI:10.1007/s00425-011-1419-7

Mayer KFX, Martis M, Hedley P E, Šimková H, Liu H, Morris JA, Steuernagel B, Taudien S, Roessner S, Gundlach H, Kubaláková M, Suchánková P, Murat F, Felder M, Nussbaumer T, Graner A, Salse J, Endo TR, Sakai H, Tanaka T, Itoh T, Sato K, Platzer M, Matsumoto T, Scholz U, Doležel J, Waugh R, Stein N (2011) Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell 23, 1249-1263; DOI:10.1105/tpc.110.082537

Christelová P, Valárik M, Hřibová E, De Langhe E, Doležel J (2011) A multi gene sequence-based phylogeny of the Musaceae (banana) family. BMC Evol. Biol. 11, 103; DOI:10.1186/1471-2148-11-103

Hřibová E, Čížková J, Christelová P, Taudien S de Langhe E, Doležel J (2011) The ITS1-5.8S-ITS2 sequence region in the Musaceae: structure, diversity and use in molecular phylogeny. PLoS One 6(3), e17863; DOI: 10.1371/journal.pone.0017863

Bartoš J, Sandve SR, Kölliker R, Kopecký D, Christelová P, Stočes Š, Ostrem L, Larsen A, Kilian A, Rognli O-A, Doležel J (2011) Genetic mapping of DArT markers in the Festuca–Lolium complex and their use in freezing tolerance association analysis. Theor. Appl. Genet. 122, 1133-1147; DOI: 10.1007/s00122-010-1518-z

Mik V, Szüčová L, Šmehilová M, Zatloukal M, Doležal K, Nisler J, Grúz J, Galuszka P, Strnad M, Spíchal L(2011) N9-substituted derivatives of kinetin: Effective anti-senescence agents. Phytochemistry 72, 821-831; DOI: 10.1016/j.phytochem.2011.02.002

Takáč T, Pechan T, Richter H, Müller J, Eck C, Böhm N, Obert B, Ren H, Niehaus K, Šamaj J (2011) Proteomics on brefeldin A-treated Arabidopsis roots reveals profilin 2 as a new protein involved in the cross-talk between vesicular trafficking and the actin cytoskeleton. J. Proteome Res. 10, 488-501; DOI: 10.1021/pr100690f

Beck M, Komis G, Ziemann A, Menzel D, Šamaj J (2011) Mitogen-activated protein kinase 4 is involved in the regulation of mitotic and cytokinetic microtubule transitions inn Arabidopsis thalianaa. New Phytol. 189, 1069-1083; DOI: 10.1111/j.1469-8137.2010.03565.x

Konieczny R, Obert B, Bleho J, Novák O, Heym C, Tuleja M, Müller J, Strnad M, Menzel D, Šamaj J (2011) Stable transformation off Mesembryanthemum crystallinumm(L.) withh Agrobacterium rhizogenessharboring the green fluorescent protein targeted to the endoplasmic reticulum. J. Plant Physiol. 168, 721-729; DOI:10.1016/j.jplph.2010.10.013

Frébort I, Kowalska M, Hluska T, Galuszka P, Frébortová J (2011) Darwin Review. Evolution of cytokinin biosynthesis and degradation. J. Exp. Bot. 62, 2431-2452; DOI: 10.1093/jxb/err004

Chamrád I, Strouhal O, Řehulka P, Lenobel R, Šebela M (2011) Microscale affinity purification of trypsin reduces background peptides in matrix-assisted laser desorption/ionization mass spectrometry of protein digests. J. Proteomics 74, 948-957; DOI: 10.1016/j.jprot.2011.02.01

Xu C, Takáč T, Burbach C, Menzel D, Šamaj J (2011) Developmental localization and the role of hydroxyproline rich glycoproteins during somatic embryogenesis of banana (Musa spp. AAA). BMC Plant Biol. 11, 38; DOI:10.1186/1471-2229-11-38

Takáč T, Pechan T, Šamaj J (2011) Differential proteomics of plant development. J. Proteomics 74, 577-588; DOI:10.1016/j.jprot.2011.02.002

2010

Tarkowski P, Floková K, Václavíková K, Jaworek P, Raus M, Nordstrom A, Novák O, Doležal K, Šebela M, Frébortová J (2010) An improvedd in vivoodeuterium labeling method for measuring the biosynthetic rate of cytokinins. Molecules 15, 9214-9229;DOI:10.3390/molecules15129214